Publications by authors named "Petr Matula"

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High-throughput screening of E3 ubiquitin ligases identifies TRIM48 as a novel negative regulator of RIG-I signaling.
Guandi Wu, Jamie Frankish, Joschka Willemsen, Dominik Ricken, Jonas Becker, Petr Matula

Cell Signal· October 2025

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Towards fair decentralized benchmarking of healthcare AI algorithms with the Federated Tumor Segmentation (FeTS) challenge.
Maximilian Zenk, Ujjwal Baid, Sarthak Pati, Akis Linardos, Brandon Edwards, Petr Matula

Nat Commun· July 2025

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Topology-preserving contourwise shape fusion.
Aleksandra Melnikova, Martin Maška, Petr Matula

Sci Rep· March 2025

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The Cell Tracking Challenge: 10 years of objective benchmarking.
Martin Maška, Vladimír Ulman, Pablo Delgado-Rodriguez, Estibaliz Gómez-de-Mariscal, Tereza Nečasová, Petr Matula

Nat Methods· July 2023

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Author Correction: Federated learning enables big data for rare cancer boundary detection.
Sarthak Pati, Ujjwal Baid, Brandon Edwards, Micah Sheller, Shih-Han Wang, Petr Matula

Nat Commun· January 2023

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Federated learning enables big data for rare cancer boundary detection.
Sarthak Pati, Ujjwal Baid, Brandon Edwards, Micah Sheller, Shih-Han Wang, Petr Matula

Nat Commun· December 2022

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Reciprocal Effects of Fibroblast Growth Factor Receptor Signaling on Dengue Virus Replication and Virion Production.
Mirko Cortese, Anil Kumar, Petr Matula, Lars Kaderali, Pietro Scaturro

Cell Rep· May 2019

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Replication of ribosomal DNA in occurs both inside and outside the nucleolus during S phase progression.
Martina Dvořáčková, Berta Raposo, Petr Matula, Joerg Fuchs, Veit Schubert

J Cell Sci· January 2018

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Reprogramming of Adult Peripheral Blood Cells into Human Induced Pluripotent Stem Cells as a Safe and Accessible Source of Endothelial Cells.
Pavel Simara, Lenka Tesarova, Daniela Rehakova, Simon Farkas, Barbara Salingova, Pavel Matula, Petr Matula

Stem Cells Dev· January 2018

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An objective comparison of cell-tracking algorithms.
Vladimír Ulman, Martin Maška, Klas E G Magnusson, Olaf Ronneberger, Carsten Haubold, Pavel Matula, Petr Matula

Nat Methods· December 2017

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Phosphorylation-Dependent Feedback Inhibition of RIG-I by DAPK1 Identified by Kinome-wide siRNA Screening.
Joschka Willemsen, Oliver Wicht, Julia C Wolanski, Nina Baur, Sandra Bastian, Petr Matula

Mol Cell· February 2017

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Cell Tracking Accuracy Measurement Based on Comparison of Acyclic Oriented Graphs.
Pavel Matula, Martin Maška, Dmitry V Sorokin, Petr Matula, Carlos Ortiz-de-Solórzano

PLoS One· June 2016

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The SUMOylation Pathway Restricts Gene Transduction by Adeno-Associated Viruses.
Christina Hölscher, Florian Sonntag, Katharina Henrich, Qingxin Chen, Jürgen Beneke, Petr Matula

PLoS Pathog· December 2015

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Performance and sensitivity evaluation of 3D spot detection methods in confocal microscopy.
Karel Štěpka, Pavel Matula, Petr Matula, Stefan Wörz, Karl Rohr

Cytometry A· August 2015

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Fibroblast growth factor and canonical WNT/β-catenin signaling cooperate in suppression of chondrocyte differentiation in experimental models of FGFR signaling in cartilage.
Marcela Buchtova, Veronika Oralova, Anie Aklian, Jan Masek, Iva Vesela, Petr Matula

Biochim Biophys Acta· May 2015

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A benchmark for comparison of cell tracking algorithms.
Martin Maška, Vladimír Ulman, David Svoboda, Pavel Matula, Petr Matula

Bioinformatics· June 2014

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miR-17-5p regulates endocytic trafficking through targeting TBC1D2/Armus.
Andrius Serva, Bettina Knapp, Yueh-Tso Tsai, Christoph Claas, Tautvydas Lisauskas, Petr Matula

PLoS One· June 2013

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Live-cell assays to identify regulators of ER-to-Golgi trafficking.
Tautvydas Lisauskas, Petr Matula, Christoph Claas, Susanne Reusing, Stefan Wiemann

Traffic· March 2012

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Normalizing for individual cell population context in the analysis of high-content cellular screens.
Bettina Knapp, Ilka Rebhan, Anil Kumar, Petr Matula, Narsis A Kiani

BMC Bioinformatics· December 2011

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Micro axial tomography: a miniaturized, versatile stage device to overcome resolution anisotropy in fluorescence light microscopy.
Florian Staier, Heinz Eipel, Petr Matula, Alexei V Evsikov, Michal Kozubek

Rev Sci Instrum· September 2011

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Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment.
Simon Reiss, Ilka Rebhan, Perdita Backes, Ines Romero-Brey, Holger Erfle, Petr Matula

Cell Host Microbe· January 2011

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Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images.
Apichat Suratanee, Ilka Rebhan, Petr Matula, Anil Kumar, Lars Kaderali

Bioinformatics· September 2010

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Single-cell-based image analysis of high-throughput cell array screens for quantification of viral infection.
Petr Matula, Anil Kumar, Ilka Wörz, Holger Erfle, Ralf Bartenschlager

Cytometry A· April 2009

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Directional motion of foreign plasmid DNA to nuclear HP1 foci.
Vladan Ondrej, Stanislav Kozubek, Emílie Lukásová, Martin Falk, Pavel Matula, Petr Matula

Chromosome Res· October 2006

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Fast point-based 3-D alignment of live cells.
Petr Matula, Pavel Matula, Michal Kozubek, Vladimír Dvorák

IEEE Trans Image Process· August 2006

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