Publications by authors named "Petr Sulc"

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Repeats mimic pathogen-associated patterns across a vast evolutionary landscape.
Petr Šulc, Andrea Di Gioacchino, Alexander Solovyov, Siyu Sun, Stephen Martis

Cell Genom· December 2025

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High-speed 3D DNA PAINT and unsupervised clustering for unlocking 3D DNA origami cryptography.
Gde Bimananda Mahardika Wisna, Daria Sukhareva, Jonathan Zhao, Prathamesh Chopade, Deeksha Satyabola

Nat Commun· December 2025

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Inverse Thermodynamics: Designing Interactions for Targeted Phase Behavior.
Camilla Beneduce, Giuseppe Mastriani, Petr Šulc, Francesco Sciortino, John Russo

J Phys Chem B· October 2025

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Mismatch-Assisted Toehold Exchange Cascades for Magnetic Nanoparticle-based Nucleic Acid Diagnostics.
Rebecca Sack, Joshua Evans, Florian Wolgast, Meinhard Schilling, Thilo Viereck

JACS Au· September 2025

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DNA-Templated Spatially Controlled Proteolysis Targeting Chimera for Cyclin D1-CDK4/6 Complex Protein Degradation.
Rong Zheng, Abhay Prasad, Deeksha Satyabola, Yang Xu, Subhajit Roy

J Am Chem Soc· August 2025

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High-speed 3D DNA PAINT and unsupervised clustering for unlocking 3D DNA origami cryptography.
Gde Bimananda Mahardika Wisna, Daria Sukhareva, Jonathan Zhao, Prathamesh Chopade, Deeksha Satyabola

bioRxiv· August 2025

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How We Simulate DNA Origami.
Sarah Haggenmueller, Michael Matthies, Matthew Sample, Petr Šulc

Small Methods· June 2025

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Controlling DNA-RNA strand displacement kinetics with base distribution.
Eryk J Ratajczyk, Jonathan Bath, Petr Šulc, Jonathan P K Doye, Ard A Louis

Proc Natl Acad Sci U S A· June 2025

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Falsifiability Test for Classical Nucleation Theory.
Camilla Beneduce, Diogo E P Pinto, Lorenzo Rovigatti, Flavio Romano, Petr Šulc

Phys Rev Lett· April 2025

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Automating Blueprints for the Assembly of Colloidal Quasicrystal Clusters.
Diogo E P Pinto, Petr Šulc, Francesco Sciortino, John Russo

ACS Nano· January 2025

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Combination of Coevolutionary Information and Supervised Learning Enables Generation of Cyclic Peptide Inhibitors with Enhanced Potency from a Small Data Set.
Ylenia Mazzocato, Nicola Frasson, Matthew Sample, Cristian Fregonese, Angela Pavan

ACS Cent Sci· December 2024

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Hairygami: Analysis of DNA Nanostructures' Conformational Change Driven by Functionalizable Overhangs.
Matthew Sample, Hao Liu, Thong Diep, Michael Matthies, Petr Šulc

ACS Nano· October 2024

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Coarse-grained modeling of DNA-protein interactions helps elucidate DNA compaction.
Petr Šulc

Biophys J· September 2024

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Single-molecule force spectroscopy of toehold-mediated strand displacement.
Andreas Walbrun, Tianhe Wang, Michael Matthies, Petr Šulc, Friedrich C Simmel

Nat Commun· August 2024

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Inverse design of a pyrochlore lattice of DNA origami through model-driven experiments.
Hao Liu, Michael Matthies, John Russo, Lorenzo Rovigatti, Raghu Pradeep Narayanan

Science· May 2024

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RNA-induced Allosteric Coupling Drives Viral Capsid Assembly.
Sean Hamilton, Tushar Modi, Petr Šulc, S Banu Ozkan

PRX Life· March 2024

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Coarse-grained modeling of DNA-RNA hybrids.
Eryk J Ratajczyk, Petr Šulc, Andrew J Turberfield, Jonathan P K Doye, Ard A Louis

J Chem Phys· March 2024

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Inverse Design of Self-Folding 3D Shells.
Diogo E P Pinto, Nuno A M Araújo, Petr Šulc, John Russo

Phys Rev Lett· March 2024

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A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower.
Mathias Centola, Erik Poppleton, Sujay Ray, Martin Centola, Robb Welty

Nat Nanotechnol· February 2024

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DNA-Nanostructure-Guided Assembly of Proteins into Programmable Shapes.
Qinyi Lu, Yang Xu, Erik Poppleton, Kun Zhou, Petr Sulc

Nano Lett· February 2024

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Designing 3D multicomponent self-assembling systems with signal-passing building blocks.
Joshua Evans, Petr Šulc

J Chem Phys· February 2024

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Engineering Azeotropy to Optimize the Self-Assembly of Colloidal Mixtures.
Camilla Beneduce, Francesco Sciortino, Petr Šulc, John Russo

ACS Nano· December 2023

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CytoDirect: A Nucleic Acid Nanodevice for Specific and Efficient Delivery of Functional Payloads to the Cytoplasm.
Lu Yu, Yang Xu, Md Al-Amin, Shuoxing Jiang, Matthew Sample

J Am Chem Soc· December 2023

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High-affinity binding to the SARS-CoV-2 spike trimer by a nanostructured, trivalent protein-DNA synthetic antibody.
Yang Xu, Rong Zheng, Abhay Prasad, Minghui Liu, Zijian Wan, Petr Sulc

bioRxiv· September 2023

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Desmocollin-1 is associated with pro-metastatic phenotype of luminal A breast cancer cells and is modulated by parthenolide.
Petr Lapcik, Petr Sulc, Lucia Janacova, Katerina Jilkova, David Potesil

Cell Mol Biol Lett· August 2023

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