Publications by authors named "Philippe Hupe"

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ONCOLINER: A new solution for monitoring, improving, and harmonizing somatic variant calling across genomic oncology centers.
Rodrigo Martín, Nicolás Gaitán, Frédéric Jarlier, Lars Feuerbach, Henri de Soyres

Cell Genom· September 2024

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Serum and Salivary IgG and IgA Response After COVID-19 Messenger RNA Vaccination.
Guy Gorochov, Jacques Ropers, Odile Launay, Karim Dorgham, Omaira da Mata-Jardin

JAMA Netw Open· April 2024

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Patient Derived Xenografts (PDX) Models as an Avatar to Assess Personalized Therapy Options in Uveal Melanoma: A Feasibility Study.
Fariba Nemati, Leanne de Koning, David Gentien, Franck Assayag, Emilie Henry

Curr Oncol· October 2023

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Influence of FLG loss-of-function mutations in host-microbe interactions during atopic skin inflammation.
Peter Oláh, Eszter Szlávicz, Marcus Kuchner, Jana Nemmer, Patrick Zeeuwen

J Dermatol Sci· June 2022

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A comparison of Sars-Cov-2 vaccine platforms: the CoviCompare project.
Diana Molino, Christine Durier, Anne Radenne, Corinne Desaint, Jacques Ropers

Nat Med· May 2022

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Geniac: Automatic Configuration GENerator and Installer for nextflow pipelines.
Fabrice Allain, Julien Roméjon, Philippe La Rosa, Frédéric Jarlier, Nicolas Servant

Open Res Eur· February 2022

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: development workflow protocols for bioinformatics pipelines with git and GitLab.
Choumouss Kamoun, Julien Roméjon, Henri de Soyres, Apolline Gallois, Elodie Girard

F1000Res· April 2021

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QUARTIC: QUick pArallel algoRithms for high-Throughput sequencIng data proCessing.
Frédéric Jarlier, Nicolas Joly, Nicolas Fedy, Thomas Magalhaes, Leonor Sirotti

F1000Res· March 2021

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Corrigendum to 'clinical and genetic landscape of treatment naive cervical cancer: Alterations in PIK3CA and in epigenetic modulators associated with sub-optimal outcome'.
Suzy Scholl, Marina Popovic, Anne de la Rochefordiere, Elodie Girard, Sylvain Dureau, Philippe Hupe

EBioMedicine· July 2020

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Analytical Platforms 1: Use of Cultured Cells and Fluorescent Read-Out Coupled to NormaCurve Normalization in RPPA.
Bérengère Ouine, Sabine Rajkumar, Philippe Hupé, Leanne de Koning

Adv Exp Med Biol· December 2019

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A Quantitative Multivariate Model of Human Dendritic Cell-T Helper Cell Communication.
Maximilien Grandclaudon, Marie Perrot-Dockès, Coline Trichot, Léa Karpf, Omar Abouzid

Cell· October 2019

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ART-DeCo: easy tool for detection and characterization of cross-contamination of DNA samples in diagnostic next-generation sequencing analysis.
Alice Fiévet, Virginie Bernard, Henrique Tenreiro, Catherine Dehainault, Elodie Girard, Philippe Hupe

Eur J Hum Genet· May 2019

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Clinical and genetic landscape of treatment naive cervical cancer: Alterations in PIK3CA and in epigenetic modulators associated with sub-optimal outcome.
Suzy Scholl, Marina Popovic, Anne de la Rochefordiere, Elodie Girard, Sylvain Dureau, Philippe Hupe

EBioMedicine· May 2019

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Assessment of the novel online delineation workshop dummy run approach using FALCON within a European multicentre trial in cervical cancer (RAIDs).
Eleonor Rivin Del Campo, Sofia Rivera, María Martínez-Paredes, Philippe Hupé, Andrea Slocker Escarpa

Radiother Oncol· July 2017

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Whole-genome profiling helps to classify phyllodes tumours of the breast.
Marick Laé, Philippe La Rosa, Jonas Mandel, Fabien Reyal, Philippe Hupé

J Clin Pathol· December 2016

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Precision medicine in cancer: challenges and recommendations from an EU-funded cervical cancer biobanking study.
Sanne Samuels, Balazs Balint, Heiko von der Leyen, Philippe Hupé, Leanne de Koning

Br J Cancer· December 2016

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Spatiotemporal control of interferon-induced JAK/STAT signalling and gene transcription by the retromer complex.
Daniela Chmiest, Nanaocha Sharma, Natacha Zanin, Christine Viaris de Lesegno, Massiullah Shafaq-Zadah

Nat Commun· December 2016

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From prospective biobanking to precision medicine: BIO-RAIDs - an EU study protocol in cervical cancer.
Charlotte Ngo, Sanne Samuels, Ksenia Bagrintseva, Andrea Slocker, Philippe Hupé

BMC Cancer· November 2015

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Histo-genomic stratification reveals the frequent amplification/overexpression of CCNE1 and BRD4 genes in non-BRCAness high grade ovarian carcinoma.
Oumou Goundiam, Pierre Gestraud, Tatiana Popova, Thibault De la Motte Rouge, Virginie Fourchotte

Int J Cancer· October 2015

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Using Transcriptional Signatures to Assess Immune Cell Function: From Basic Mechanisms to Immune-Related Disease.
Maxime Touzot, Alix Dahirel, Antonio Cappuccio, Elodie Segura, Philippe Hupé

J Mol Biol· October 2015

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Combinatorial code governing cellular responses to complex stimuli.
Antonio Cappuccio, Raphaël Zollinger, Mirjam Schenk, Aleksandra Walczak, Nicolas Servant

Nat Commun· April 2015

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Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data.
Valentina Boeva, Tatiana Popova, Maxime Lienard, Sebastien Toffoli, Maud Kamal

Bioinformatics· December 2014

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Ultrahigh dose-rate FLASH irradiation increases the differential response between normal and tumor tissue in mice.
Vincent Favaudon, Laura Caplier, Virginie Monceau, Frédéric Pouzoulet, Mano Sayarath

Sci Transl Med· July 2014

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[Biological network modelling and precision medicine in oncology].
Laurence Calzone, Inna Kuperstein, David Cohen, Luca Grieco, Eric Bonnet

Bull Cancer· June 2014

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