Publications by authors named "Prashanth Athri"

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Computational Prediction of Potential Vaccine Candidates From tRNA Encoded peptides (tREP) Using a Bioinformatic Workflow and Molecular Dynamics Validations.
Pallavi M Shanthappa, Neeraj Verma, Anu George, Pawan K Dhar, Prashanth Athri

IEEE/ACM Trans Comput Biol Bioinform· June 2024

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Analysis of RNA-Seq data using self-supervised learning for vital status prediction of colorectal cancer patients.
Girivinay Padegal, Murali Krishna Rao, Om Amitesh Boggaram Ravishankar, Sathwik Acharya, Prashanth Athri

BMC Bioinformatics· June 2023

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Review of Electrostatic Force Calculation Methods and Their Acceleration in Molecular Dynamics Packages Using Graphics Processors.
Anu George, Sandip Mondal, Madhura Purnaprajna, Prashanth Athri

ACS Omega· September 2022

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Predicting clinical trial outcomes using drug bioactivities through graph database integration and machine learning.
Vidhya Murali, Y Pradyumna Muralidhar, Cassandra Königs, Meera Nair, Sethulekshmi Madhu, Prashanth Athri

Chem Biol Drug Des· August 2022

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A Machine Learning Understanding of Sepsis.
Manish Shetty, Soumya Mary Alex, Merlin Moni, Fabia Edathadathil, Preetha Prasanna, Prashanth Athri

Annu Int Conf IEEE Eng Med Biol Soc· November 2021

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Predicting adverse drug reactions of two-drug combinations using structural and transcriptomic drug representations to train an artificial neural network.
Susmitha Shankar, Ishita Bhandari, David T Okou, Gowri Srinivasa, Prashanth Athri

Chem Biol Drug Des· March 2021

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CompoundDB4j: Integrated Drug Resource of Heterogeneous Chemical Databases.
Vidhya Murali, Cassandra Königs, Sarvani Deekshitula, Saranya Nukala, Maddala Divya Santhi, Prashanth Athri

Mol Inform· September 2020

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Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.
Dinanath Sulakhe, Mark D'Souza, Sheng Wang, Sandhya Balasubramanian, Prashanth Athri

Brief Bioinform· September 2019

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Web-based drug repurposing tools: a survey.
Elizabeth Sam, Prashanth Athri

Brief Bioinform· January 2019

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Genetic-Algorithm-Based Optimization of a Peptidic Scaffold for Sequestration and Hydration of CO.
Elizabeth Brunk, Marta A S Perez, Prashanth Athri, Ursula Rothlisberger

Chemphyschem· December 2016

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Pushing the frontiers of first-principles based computer simulations of chemical and biological systems.
Elizabeth Brunk, Negar Ashari, Prashanth Athri, Pablo Campomanes, F Franco de Carvalho

Chimia (Aarau)· December 2011

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Polycomb preferentially targets stalled promoters of coding and noncoding transcripts.
Daniel Enderle, Christian Beisel, Michael B Stadler, Moritz Gerstung, Prashanth Athri

Genome Res· February 2011

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Pharmacophore model for pentamidine analogs active against Plasmodium falciparum.
Prashanth Athri, Tanja Wenzler, Richard Tidwell, Svetlana M Bakunova, W David Wilson

Eur J Med Chem· December 2010

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SeqAnt: a web service to rapidly identify and annotate DNA sequence variations.
Amol Carl Shetty, Prashanth Athri, Kajari Mondal, Vanessa L Horner, Karyn Meltz Steinberg

BMC Bioinformatics· September 2010

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Combining microarray-based genomic selection (MGS) with the Illumina Genome Analyzer platform to sequence diploid target regions.
David T Okou, Adam E Locke, Karyn M Steinberg, Katie Hagen, Prashanth Athri

Ann Hum Genet· September 2009

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Molecular dynamics of water-mediated interactions of a linear benzimidazole-biphenyl diamidine with the DNA minor groove.
Prashanth Athri, W David Wilson

J Am Chem Soc· June 2009

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3D QSAR on a library of heterocyclic diamidine derivatives with antiparasitic activity.
Prashanth Athri, Tanja Wenzler, Patricia Ruiz, Reto Brun, David W Boykin

Bioorg Med Chem· May 2006

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