Publications by authors named "Predrag Radivojac"

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The IGVF catalog-from genetic variation to function.
Daofeng Li, Shane Liu, Pedro R Assis, Mingjie Li, Shengcheng Dong, Predrag Radivojac

Nucleic Acids Res· December 2025

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Calibration of additional computational tools expands ClinGen recommendation options for variant classification with PP3/BP4 criteria.
Timothy Bergquist, Sarah L Stenton, Emily A W Nadeau, Alicia B Byrne, Marc S Greenblatt, Predrag Radivojac

Genet Med· June 2025

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Gene-based calibration of high-throughput functional assays for clinical variant classification.
Daniel Zeiberg, Malvika Tejura, Abbye E McEwen, Shawn Fayer, Vikas Pejaver, Predrag Radivojac

bioRxiv· May 2025

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Predicting the impact of rare variants on RNA splicing in CAGI6.
Jenny Lord, Carolina Jaramillo Oquendo, Htoo A Wai, Andrew G L Douglas, David J Bunyan, Predrag Radivojac

Hum Genet· March 2025

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Assessing predictions on fitness effects of missense variants in HMBS in CAGI6.
Jing Zhang, Lisa Kinch, Panagiotis Katsonis, Olivier Lichtarge, Milind Jagota, Predrag Radivojac

Hum Genet· March 2025

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Assessing the predicted impact of single amino acid substitutions in calmodulin for CAGI6 challenges.
Paola Turina, Giuditta Dal Cortivo, Carlos A Enriquez Sandoval, Emil Alexov, David B Ascher, Predrag Radivojac

Hum Genet· March 2025

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Evaluating predictors of kinase activity of STK11 variants identified in primary human non-small cell lung cancers.
Yile Chen, Kyoungyeul Lee, Junwoo Woo, Dong-Wook Kim, Changwon Keum, Predrag Radivojac

Hum Genet· March 2025

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Assessing the predicted impact of single amino acid substitutions in MAPK proteins for CAGI6 challenges.
Paola Turina, Maria Petrosino, Carlos A Enriquez Sandoval, Leonore Novak, Alessandra Pasquo, Predrag Radivojac

Hum Genet· March 2025

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Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A.
Shantanu Jain, Marena Trinidad, Thanh Binh Nguyen, Kaiya Jones, Santiago Diaz Neto, Predrag Radivojac

Hum Genet· March 2025

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Critical assessment of missense variant effect predictors on disease-relevant variant data.
Ruchir Rastogi, Ryan Chung, Sindy Li, Chang Li, Kyoungyeul Lee, Predrag Radivojac

Hum Genet· March 2025

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Assessment of the evidence yield for the calibrated PP3/BP4 computational recommendations.
Sarah L Stenton, Vikas Pejaver, Timothy Bergquist, Leslie G Biesecker, Alicia B Byrne, Predrag Radivojac

Genet Med· November 2024

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Calibration of additional computational tools expands ClinGen recommendation options for variant classification with PP3/BP4 criteria.
Timothy Bergquist, Sarah L Stenton, Emily A W Nadeau, Alicia B Byrne, Marc S Greenblatt, Predrag Radivojac

bioRxiv· September 2024

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Current and future directions in network biology.
Marinka Zitnik, Michelle M Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Predrag Radivojac

Bioinform Adv· August 2024

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Improving transparency of computational tools for variant effect prediction.
Rachel Karchin, Predrag Radivojac, Anne O'Donnell-Luria, Marc S Greenblatt, Michael Y Tolstorukov

Nat Genet· July 2024

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Evaluating predictors of kinase activity of STK11 variants identified in primary human non-small cell lung cancers.
Yile Chen, Kyoungyeul Lee, Junwoo Woo, Dong-Wook Kim, Changwon Keum, Predrag Radivojac

Res Sq· July 2024

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Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A.
Shantanu Jain, Marena Trinidad, Thanh Binh Nguyen, Kaiya Jones, Santiago Diaz Neto, Predrag Radivojac

bioRxiv· June 2024

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Critical assessment of missense variant effect predictors on disease-relevant variant data.
Ruchir Rastogi, Ryan Chung, Sindy Li, Chang Li, Kyoungyeul Lee, Predrag Radivojac

bioRxiv· June 2024

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An algorithm for decoy-free false discovery rate estimation in XL-MS/MS proteomics.
Yisu Peng, Shantanu Jain, Predrag Radivojac

Bioinformatics· June 2024

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The landscape of regional missense mutational intolerance quantified from 125,748 exomes.
Katherine R Chao, Lily Wang, Ruchit Panchal, Calwing Liao, Haneen Abderrazzaq, Predrag Radivojac

bioRxiv· May 2024

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Genetic polymorphisms associated with adverse pregnancy outcomes in nulliparas.
Raiyan R Khan, Rafael F Guerrero, Ronald J Wapner, Matthew W Hahn, Anita Raja, Predrag Radivojac

Sci Rep· May 2024

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Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project.
Sarah L Stenton, Melanie C O'Leary, Gabrielle Lemire, Grace E VanNoy, Stephanie DiTroia, Predrag Radivojac

Hum Genomics· April 2024

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Assessment of the evidence yield for the calibrated PP3/BP4 computational recommendations.
Sarah L Stenton, Vikas Pejaver, Timothy Bergquist, Leslie G Biesecker, Alicia B Byrne, Predrag Radivojac

medRxiv· March 2024

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CAFA-evaluator: a Python tool for benchmarking ontological classification methods.
Damiano Piovesan, Davide Zago, Parnal Joshi, M Clara De Paolis Kaluza, Mahta Mehdiabadi, Predrag Radivojac

Bioinform Adv· March 2024

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Searching and visualizing genetic associations of pregnancy traits by using GnuMoM2b.
Qi Yan, Rafael F Guerrero, Raiyan R Khan, Andy A Surujnarine, Ronald J Wapner, Predrag Radivojac

Genetics· October 2023

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Learning from the unknown: exploring the range of bacterial functionality.
Yannick Mahlich, Chengsheng Zhu, Henri Chung, Pavan K Velaga, M Clara De Paolis Kaluza, Predrag Radivojac

Nucleic Acids Res· October 2023

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