Publications by authors named "Rachel J Dutton"

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Diet rapidly and reproducibly alters the human gut microbiome.
Lawrence A David, Corinne F Maurice, Rachel N Carmody, David B Gootenberg, Julie E Button, Benjamin E Wolfe, Alisha V Ling, A Sloan Devlin, Yug Varma, Michael A Fischbach

Nature· January 2014

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Phage resistance mutations affecting the bacterial cell surface increase susceptibility to fungi in a model cheese community.
Tara C J Spencer-Drakes, Angel Sarabia, Gary Heussler, Emily C Pierce, Manon Morin, Rachel J Dutton

ISME Commun· January 2024

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Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation.
Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Rachel J Dutton

Nat Biotechnol· November 2023

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Metabolomics of bacterial-fungal pairwise interactions reveal conserved molecular mechanisms.
Gordon T Luu, Jessica C Little, Emily C Pierce, Manon Morin, Celine A Ertekin, Rachel J Dutton

Analyst· June 2023

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Metabolomics of bacterial-fungal pairwise interactions reveal conserved molecular mechanisms.
Gordon T Luu, Jessica C Little, Emily C Pierce, Manon Morin, Celine A Ertekin, Rachel J Dutton

bioRxiv· March 2023

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Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an Model for Cheese Communities.
Christina C Saak, Emily C Pierce, Cong B Dinh, Daniel Portik, Richard Hall, Rachel J Dutton

mSystems· February 2023

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Enhancing untargeted metabolomics using metadata-based source annotation.
Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Rachel J Dutton

Nat Biotechnol· December 2022

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Higher-order interactions shape microbial interactions as microbial community complexity increases.
Manon A Morin, Anneliese J Morrison, Michael J Harms, Rachel J Dutton

Sci Rep· December 2022

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Putting microbial interactions back into community contexts.
Emily C Pierce, Rachel J Dutton

Curr Opin Microbiol· February 2022

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Native mass spectrometry-based metabolomics identifies metal-binding compounds.
Allegra T Aron, Daniel Petras, Robin Schmid, Julia M Gauglitz, Isabell Büttel, Rachel J Dutton

Nat Chem· January 2022

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A community resource for paired genomic and metabolomic data mining.
Michelle A Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D Acharya, Rachel J Dutton

Nat Chem Biol· April 2021

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Bacterial-fungal interactions revealed by genome-wide analysis of bacterial mutant fitness.
Emily C Pierce, Manon Morin, Jessica C Little, Roland B Liu, Joanna Tannous, Rachel J Dutton

Nat Microbiol· January 2021

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Experimental approaches to tracking mobile genetic elements in microbial communities.
Christina C Saak, Cong B Dinh, Rachel J Dutton

FEMS Microbiol Rev· September 2020

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BLANKA: an Algorithm for Blank Subtraction in Mass Spectrometry of Complex Biological Samples.
Jessica L Cleary, Gordon T Luu, Emily C Pierce, Rachel J Dutton, Laura M Sanchez

J Am Soc Mass Spectrom· August 2019

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Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi.
Jason M Peters, Byoung-Mo Koo, Ramiro Patino, Gary E Heussler, Cameron C Hearne, Rachel J Dutton

Nat Microbiol· February 2019

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Changes in the genetic requirements for microbial interactions with increasing community complexity.
Manon Morin, Emily C Pierce, Rachel J Dutton

Elife· September 2018

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Extensive horizontal gene transfer in cheese-associated bacteria.
Kevin S Bonham, Benjamin E Wolfe, Rachel J Dutton

Elife· June 2017

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Erratum for Kastman et al., "Biotic Interactions Shape the Ecological Distributions of Species".
Erik K Kastman, Noelani Kamelamela, Josh W Norville, Casey M Cosetta, Rachel J Dutton

mBio· March 2017

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Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species.
Erik K Kastman, Noelani Kamelamela, Josh W Norville, Casey M Cosetta, Rachel J Dutton

mBio· October 2016

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mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking.
Nicholas A Bokulich, Jai Ram Rideout, William G Mercurio, Arron Shiffer, Benjamin Wolfe, Rachel J Dutton

mSystems· October 2016

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Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.
Mingxun Wang, Jeremy J Carver, Vanessa V Phelan, Laura M Sanchez, Neha Garg, Rachel J Dutton

Nat Biotechnol· August 2016

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From Sample to Multi-Omics Conclusions in under 48 Hours.
Robert A Quinn, Jose A Navas-Molina, Embriette R Hyde, Se Jin Song, Yoshiki Vázquez-Baeza, Rachel J Dutton

mSystems· April 2016

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The significance of cooking for early hominin scavenging.
Alex R Smith, Rachel N Carmody, Rachel J Dutton, Richard W Wrangham

J Hum Evol· July 2015

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Fermented foods as experimentally tractable microbial ecosystems.
Benjamin E Wolfe, Rachel J Dutton

Cell· March 2015

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Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity.
Benjamin E Wolfe, Julie E Button, Marcela Santarelli, Rachel J Dutton

Cell· July 2014

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