Publications by authors named "Rachel Poretsky"

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A 1-year study on SARS-CoV-2 variant shifts in wastewater using dPCR: comparison with clinical and GISAID data.
Sayed Mohammad R Mosavi, Patrick Acer, Patrick Andersen, Robbie Barbero, Stephanie Barksdale, Rachel Poretsky

mSystems· November 2025

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BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration.
Maulik Shukla, Alice R Wattam, Antonio Aleman, Roshni Bhattacharya, Nicole Bowers, Rachel Poretsky

Nucleic Acids Res· November 2025

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Establishing a Practical Approach to Sewer Monitoring for Antimicrobial Resistance Genes and Organisms at Healthcare Facilities.
Rachel S Poretsky, Dolores Sanchez Gonzalez, Adam Horton, Michael Schoeny, Chi-Yu Lin

J Infect Dis· September 2025

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Multiplexed Detection, Partitioning, and Persistence of Wild-Type and Vaccine Strains of Measles, Mumps, and Rubella Viruses in Wastewater.
Jingjing Wu, Michael X Wang, Prashant Kalvapalle, Michael Nute, Todd J Treangen, Rachel Poretsky

Environ Sci Technol· December 2024

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Perspectives on the future of ecology, evolution, and biodiversity from the Council on Microbial Sciences of the American Society for Microbiology.
Denise M Akob, A Elizabeth Oates, Peter R Girguis, Brian D Badgley, Vaughn S Cooper, Rachel S Poretsky

mSphere· November 2024

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Wastewater Surveillance for Poliovirus in Selected Jurisdictions, United States, 2022-2023.
Erin R Whitehouse, Nancy Gerloff, Randall English, Stacie K Reckling, Mohammed A Alazawi, Rachel Poretsky

Emerg Infect Dis· November 2024

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Using wastewater surveillance for mpox as a complement to traditional case-based reporting - Chicago, March-June 2023.
Dorothy Foulkes, Alyse Kittner, Colin Korban, Kendall Anderson, Peter M DeJonge, Rachel Poretsky

Environ Int· August 2024

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A modeling pipeline to relate municipal wastewater surveillance and regional public health data.
Katelyn Plaisier Leisman, Christopher Owen, Maria M Warns, Anuj Tiwari, George Zhixin Bian, Rachel Poretsky

Water Res· March 2024

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Correlation of wastewater surveillance data with traditional influenza surveillance measures in Cook County, Illinois, October 2022-April 2023.
Emily A G Faherty, Deniz Yuce, Colin Korban, Kelley Bemis, Rishi Kowalski, Rachel Poretsky

Sci Total Environ· February 2024

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Intensity of sample processing methods impacts wastewater SARS-CoV-2 whole genome amplicon sequencing outcomes.
Shuchen Feng, Sarah M Owens, Abhilasha Shrestha, Rachel Poretsky, Erica M Hartmann

Sci Total Environ· June 2023

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Reduction and discharge of SARS-CoV-2 RNA in Chicago-area water reclamation plants.
Christopher Owen, Dorothy Wright-Foulkes, Prisila Alvarez, Haidy Delgado, Eva C Durance, Rachel Poretsky

FEMS Microbes· May 2022

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Influences of claywater and greenwater on the skin microbiome of cultured larval sablefish (Anoplopoma fimbria).
Emily T Dodd, Melissa L Pierce, Jonathan S F Lee, Rachel S Poretsky

Anim Microbiome· August 2020

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Comparative Analysis of Gut Microbiota Following Changes in Training Volume Among Swimmers.
Jarrad Timothy Hampton-Marcell, Tifani W Eshoo, Marc D Cook, Jack A Gilbert, Craig A Horswill, Rachel Poretsky

Int J Sports Med· May 2020

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Microbial and Viral Communities and Their Antibiotic Resistance Genes Throughout a Hospital Wastewater Treatment System.
Morgan L Petrovich, Adi Zilberman, Aviv Kaplan, Gefen R Eliraz, Yubo Wang, Rachel Poretsky

Front Microbiol· February 2020

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Viral composition and context in metagenomes from biofilm and suspended growth municipal wastewater treatment plants.
Morgan L Petrovich, Sarah Ben Maamar, Erica M Hartmann, Brian T Murphy, Rachel S Poretsky

Microb Biotechnol· November 2019

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Ultraviolet disinfection impacts the microbial community composition and function of treated wastewater effluent and the receiving urban river.
Imrose Kauser, Mark Ciesielski, Rachel S Poretsky

PeerJ· August 2019

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Antibiotic resistance genes show enhanced mobilization through suspended growth and biofilm-based wastewater treatment processes.
Morgan Petrovich, Binh Chu, Dorothy Wright, Jim Griffin, Maryam Elfeki, Rachel Poretsky

FEMS Microbiol Ecol· November 2018

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Taxon-Driven Functional Shifts Associated with Storm Flow in an Urban Stream Microbial Community.
Adit Chaudhary, Imrose Kauser, Anirban Ray, Rachel Poretsky

mSphere· July 2018

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Antibiotic resistance genes show enhanced mobilization through suspended growth and biofilm-based wastewater treatment processes.
Morgan Petrovich, Binh Chu, Dorothy Wright, Jim Griffin, Maryam Elfeki, Rachel Poretsky

FEMS Microbiol Ecol· May 2018

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Metagenomics Reveals the Impact of Wastewater Treatment Plants on the Dispersal of Microorganisms and Genes in Aquatic Sediments.
Binh T T Chu, Morgan L Petrovich, Adit Chaudhary, Dorothy Wright, Brian Murphy, Rachel Poretsky

Appl Environ Microbiol· March 2018

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Quantifying the Importance of the Rare Biosphere for Microbial Community Response to Organic Pollutants in a Freshwater Ecosystem.
Yuanqi Wang, Janet K Hatt, Despina Tsementzi, Luis M Rodriguez-R, Carlos A Ruiz-Pérez, Rachel Poretsky

Appl Environ Microbiol· April 2017

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Dimethylsulfoniopropionate (DMSP) Increases Survival of Larval Sablefish, Anoplopoma fimbria.
Jonathan S F Lee, Rachel S Poretsky, Matthew A Cook, Jose J Reyes-Tomassini, Barry A Berejikian

J Chem Ecol· June 2016

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Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics.
Rachel Poretsky, Luis M Rodriguez-R, Chengwei Luo, Despina Tsementzi, Konstantinos T Konstantinidis

PLoS One· January 2015

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Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities.
Despina Tsementzi, Rachel Poretsky, Luis M Rodriguez-R, Chengwei Luo, Konstantinos T Konstantinidis

Environ Microbiol Rep· December 2014

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Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem.
Seungdae Oh, Alejandro Caro-Quintero, Despina Tsementzi, Natasha DeLeon-Rodriguez, Chengwei Luo, Rachel Poretsky

Appl Environ Microbiol· September 2011

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