Publications by authors named "Rachel Whitaker"

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Plasmid transmission dynamics and evolution of partner quality in a natural population of .
David Vereau Gorbitz, Chase P Schwarz, John G McMullen, Mario Cerón-Romero, Rebecca T Doyle, Rachel J Whitaker

mBio· December 2025

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Discovery, characterization, and application of chromosomal integration sites in the hyperthermophilic archaeon Sulfolobus islandicus.
Aashutosh Girish Boob, Changyi Zhang, Yuwei Pan, Airah Zaidi, Rachel J Whitaker

Trends Biotechnol· December 2025

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Basic Science and Pathogenesis.
Rachel A Hellmann Whitaker

Alzheimers Dement· December 2025

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Conserved cross-domain protein-to-mRNA ratios enable proteome prediction in microbes.
Mengshi Zhang, Changyi Zhang, Anayancy Ramos, Rachel J Whitaker, Marvin Whiteley

mBio· August 2025

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Complete genome sequence of the hyperthermophilic archaeon Y08.82.36 isolated from a Yellowstone hot spring.
Changyi Zhang, Edward E Andrews, Thomas W Cowell, Nikki H Gedrimas, Rachel J Whitaker

Microbiol Resour Announc· August 2025

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Evolutionary trends in CRISPR-Cas systems.
Carrie L Ganote, Lílian Caesar, Danny W Rice, Rachel J Whitaker, Irene L G Newton

mSystems· July 2025

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Host Competitive Asymmetries Accelerate Viral Evolution in a Microbe-Virus Coevolutionary System.
Armun Liaghat, Martin Guillemet, Rachel Whitaker, Sylvain Gandon, Mercedes Pascual

Ecol Lett· June 2025

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Clinical validity of dried blood spot assay for the measurement of functional C1 inhibitor in angioedema due to C1 inhibitor deficiency.
Jonathan A Bernstein, Jie Cheng, Thomas Pisani, Dan Sexton, Rachel E Whitaker

J Allergy Clin Immunol Glob· May 2025

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Reply to: Natively expressed AcrIII-1 does not function as an anti-CRISPR protein.
Januka S Athukoralage, Stephen A McMahon, Changyi Zhang, Sabine Grüschow, Shirley Graham, Rachel J Whitaker

Nature· April 2025

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Metagenome-assembled genomes of freshwater sp. G-191 and sp. enriched from Cedar Swamp, Woods Hole, MA.
Yolanda Huang, Rebecca Schomer, María José Rodríguez Reyes, Kyle Costa, Rebecca E Parales, Rachel Whitaker

Microbiol Resour Announc· December 2024

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Perspectives on the future of ecology, evolution, and biodiversity from the Council on Microbial Sciences of the American Society for Microbiology.
Denise M Akob, A Elizabeth Oates, Peter R Girguis, Brian D Badgley, Vaughn S Cooper, Rachel J Whitaker

mSphere· November 2024

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Phage-mediated resolution of genetic conflict alters the evolutionary trajectory of lysogens.
Laura C Suttenfield, Zoi Rapti, Jayadevi H Chandrashekhar, Amelia C Steinlein, Juan Cristobal Vera, Rachel J Whitaker

mSystems· September 2024

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Punctuated virus-driven succession generates dynamical alternations in CRISPR-mediated microbe-virus coevolution.
Armun Liaghat, Jiayue Yang, Rachel Whitaker, Mercedes Pascual

J R Soc Interface· August 2024

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Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea.
Kira S Makarova, Changyi Zhang, Yuri I Wolf, Svetlana Karamycheva, Rachel J Whitaker

mBio· February 2024

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Local and Environmental Reservoirs of After Hurricane Florence Flooding.
Yuqing Mao, Mohamed Zeineldin, Moiz Usmani, Antarpreet Jutla, Joanna L Shisler, Rachel J Whitaker

Geohealth· November 2023

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Genomic insight and physiological characterization of thermoacidophilic isolated from Yellowstone National Park.
Hye Won Kim, Na Kyung Kim, Alex P R Phillips, David A Parker, Ping Liu, Rachel J Whitaker

Front Microbiol· September 2023

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CRISPR Comparison Toolkit: Rapid Identification, Visualization, and Analysis of CRISPR Array Diversity.
Alan J Collins, Rachel J Whitaker

CRISPR J· August 2023

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Horizontal Gene Transfer and CRISPR Targeting Drive Phage-Bacterial Host Interactions and Coevolution in "Pink Berry" Marine Microbial Aggregates.
James C Kosmopoulos, Danielle E Campbell, Rachel J Whitaker, Elizabeth G Wilbanks

Appl Environ Microbiol· July 2023

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Horizontal gene transfer and CRISPR targeting drive phage-bacterial host interactions and coevolution in pink berry marine microbial aggregates.
James C Kosmopoulos, Danielle E Campbell, Rachel J Whitaker, Elizabeth G Wilbanks

bioRxiv· February 2023

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Integrated conjugative plasmid drives high frequency chromosomal gene transfer in .
Ruben L Sanchez-Nieves, Changyi Zhang, Rachel J Whitaker

Front Microbiol· January 2023

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A Rapid Targeted Gene Inactivation Approach in Sulfolobus islandicus.
Changyi Zhang, Serina M Taluja, Emily N Hallett, Rachel J Whitaker

Methods Mol Biol· September 2022

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Transposon Insertion Mutagenesis in Hyperthermophilic Crenarchaeon Sulfolobus islandicus.
Changyi Zhang, Rachel J Whitaker

Methods Mol Biol· September 2022

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A short prokaryotic Argonaute activates membrane effector to confer antiviral defense.
Zhifeng Zeng, Yu Chen, Rafael Pinilla-Redondo, Shiraz A Shah, Fen Zhao, Rachel J Whitaker

Cell Host Microbe· July 2022

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Prediction of Prophages and Their Host Ranges in Pathogenic and Commensal Species.
Giulia Orazi, Alan J Collins, Rachel J Whitaker

mSystems· June 2022

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Phage-Antibiotic Synergy Inhibited by Temperate and Chronic Virus Competition.
Kylie J Landa, Lauren M Mossman, Rachel J Whitaker, Zoi Rapti, Sara M Clifton

Bull Math Biol· March 2022

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