Publications by authors named "Raf Winand"

Claim this Profile
I
Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databases.
Raf Winand, Elizabet D'hooge, Alexander Van Uffelen, Bert Bogaerts, Julien Van Braekel

BMC Genomics· August 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.
Bert Bogaerts, Julien Van Braekel, Alexander Van Uffelen, Jolien D'aes, Maxime Godfroid, Raf Winand

BMC Genomics· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Concentrations and distribution of chlorinated paraffins in Belgian foods.
Thomas J McGrath, Franck Limonier, Giulia Poma, Jasper Bombeke, Raf Winand

Environ Pollut· December 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations.
Bert Bogaerts, Raf Winand, Julien Van Braekel, Stefan Hoffman, Nancy H C Roosens

Microb Genom· November 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
W
Whole-genome-based phylogenomic analysis of the Belgian 2016-2017 influenza A(H3N2) outbreak season allows improved surveillance.
Laura A E Van Poelvoorde, Bert Bogaerts, Qiang Fu, Sigrid C J De Keersmaecker, Isabelle Thomas, Raf Winand

Microb Genom· September 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and Approaches.
Bert Bogaerts, Thomas Delcourt, Karine Soetaert, Samira Boarbi, Pieter-Jan Ceyssens, Raf Winand

J Clin Microbiol· May 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation.
Bert Bogaerts, Raf Winand, Julien Van Braekel, Wesley Mattheus, Sigrid C J De Keersmaecker

Microorganisms· April 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
V
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing using a reference collection extensively characterized with conventional methods.
Bert Bogaerts, Stéphanie Nouws, Bavo Verhaegen, Sarah Denayer, Julien Van Braekel, Raf Winand

Microb Genom· March 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples.
Steven Van Borm, Qiang Fu, Raf Winand, Kevin Vanneste, Mikhayil Hakhverdyan

J Virol Methods· September 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing.
Marie-Alice Fraiture, Bert Bogaerts, Raf Winand, Marie Deckers, Nina Papazova

Sci Rep· April 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus.
Bas Berbers, Assia Saltykova, Cristina Garcia-Graells, Patrick Philipp, Fabrice Arella, Raf Winand

Sci Rep· March 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case.
Marie Deckers, Kevin Vanneste, Raf Winand, Sigrid C J De Keersmaecker, Sarah Denayer

Food Chem· February 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
TARGETING THE 16S RRNA GENE FOR BACTERIAL IDENTIFICATION IN COMPLEX MIXED SAMPLES: COMPARATIVE EVALUATION OF SECOND (ILLUMINA) AND THIRD (OXFORD NANOPORE TECHNOLOGIES) GENERATION SEQUENCING TECHNOLOGIES.
Raf Winand, Bert Bogaerts, Stefan Hoffman, Loïc Lefevre, Maud Delvoye

Int J Mol Sci· December 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
V
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: as a Proof-of-Concept.
Bert Bogaerts, Raf Winand, Qiang Fu, Julien Van Braekel, Pieter-Jan Ceyssens

Front Microbiol· March 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
N
Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO.
Marie-Alice Fraiture, Assia Saltykova, Stefan Hoffman, Raf Winand, Dieter Deforce

Sci Rep· May 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Methylome analysis for spina bifida shows hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube development.
Anne Rochtus, Raf Winand, Griet Laenen, Elise Vangeel, Benedetta Izzi

Clin Epigenetics· April 2017

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
DNA methylation analysis of Homeobox genes implicates HOXB7 hypomethylation as risk factor for neural tube defects.
Anne Rochtus, Benedetta Izzi, Elise Vangeel, Sophie Louwette, Christine Wittevrongel, Raf Winand

Epigenetics· June 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals.
Raf Winand, Kristof Theys, Mónica Eusébio, Jan Aerts, Ricardo J Camacho

AIDS· September 2015

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
dendsort: modular leaf ordering methods for dendrogram representations in R.
Ryo Sakai, Raf Winand, Toni Verbeiren, Andrew Vande Moere, Jan Aerts

F1000Res· September 2014

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
In vitro screening of embryos by whole-genome sequencing: now, in the future or never?
Raf Winand, Kristien Hens, Wybo Dondorp, Guido de Wert, Yves Moreau

Hum Reprod· April 2014

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis