Publications by authors named "Raffaele Calogero"

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Single cell transcriptional perturbome in pluripotent stem cell models.
Elisa Balmas, Maria L Ratto, Kirsten E Snijders, Silvia Becca, Carla Liaci, Raffaele A Calogero

Mol Syst Biol· December 2025

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The absence of IL17A favours cytotoxic cell function and improves antigen-specific immunotherapies in pancreatic adenocarcinoma.
Giorgia Tiberi, Alessandro Scagliotti, Claudia Curcio, Ermes Candiello, Paula Ariadna Diez Villegas, Raffaele A Calogero

Clin Transl Med· August 2025

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Epigenetic regulation of HOXA2 expression affects tumor progression and predicts breast cancer patient survival.
Fatima Domenica Elisa De Palma, Jonathan G Pol, Vincent Carbonnier, Sarah Adriana Scuderi, Deborah Mannino, Raffaele Calogero

Cell Death Differ· April 2025

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UnifiedGreatMod: a new holistic modelling paradigm for studying biological systems on a complete and harmonious scale.
Riccardo Aucello, Simone Pernice, Dora Tortarolo, Raffaele A Calogero, Celia Herrera-Rincon

Bioinformatics· March 2025

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miRNome Characterization of Milk-Derived Extracellular Vesicles in Recombinant Somatotropin-Treated Dairy Cows.
Alessandro Benedetto, Nunzia Giaccio, Maddalena Arigoni, Raffaele Adolfo Calogero, Patricia Regal

Int J Mol Sci· March 2025

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miRNA-503 inhibition exerts anticancer effects and reduces tumor growth in mesothelioma.
Miriam Piccioni, Francesco Di Meo, Anna Valentino, Virginia Campani, Maddalena Arigoni, Raffaele A Calogero

J Exp Clin Cancer Res· February 2025

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Urine-derived podocytes from steroid resistant nephrotic syndrome patients as a model for renal-progenitor derived extracellular vesicles effect and drug screening.
Adele Tanzi, Lola Buono, Cristina Grange, Corinne Iampietro, Alessia Brossa, Raffaele Calogero

J Transl Med· August 2024

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In pancreatic cancer patients, chemotherapy reshapes the gene expression profile and antigen receptor repertoire of T lymphocytes and enhances their effector response to tumor-associated antigens.
Silvia Brugiapaglia, Sara Bulfamante, Claudia Curcio, Maddalena Arigoni, Raffaele Calogero

Front Immunol· August 2024

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Additional copies of 1q negatively impact the outcome of multiple myeloma patients and induce transcriptomic deregulation in malignant plasma cells.
Mattia D'Agostino, Delia Rota-Scalabrini, Angelo Belotti, Luca Bertamini, Maddalena Arigoni, Raffaele Adolfo Calogero

Blood Cancer J· June 2024

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CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications.
Simone Alessandri, Maria L Ratto, Sergio Rabellino, Gabriele Piacenti, Sandro Gepiro Contaldo, Raffaele A Calogero

BMC Bioinformatics· March 2024

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A single cell RNAseq benchmark experiment embedding "controlled" cancer heterogeneity.
Maddalena Arigoni, Maria Luisa Ratto, Federica Riccardo, Elisa Balmas, Lorenzo Calogero, Raffaele A Calogero

Sci Data· February 2024

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Urine-derived podocytes from steroid resistant nephrotic syndrome patients as a model for renal-progenitor derived extracellular vesicles effect and drug screening.
Adele Tanzi, Lola Buono, Cristina Grange, Corinne Iampietro, Alessia Brossa, Raffaele Calogero

Res Sq· February 2024

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Surface protein and functional analyses identify CD4+CD39+ TCR αβ+ and activated TCR Vδ1+ cells with distinct pro-inflammatory functions in Crohn's disease lesions.
Jan Devan, Vladimir Nosi, Julian Spagnuolo, Andrew Chancellor, Aisha Beshirova, Raffaele Calogero

Clin Exp Immunol· January 2024

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RNAseq Analysis of Livers from Pigs Treated with Testosterone and Nandrolone Esters: Selection and Field Validation of Transcriptional Biomarkers.
Alessandro Benedetto, Kamil Šťastný, Nunzia Giaccio, Marianna Marturella, Elena Biasibetti, Raffaele Calogero

Animals (Basel)· November 2023

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Promiscuous recognition of MR1 drives self-reactive mucosal-associated invariant T cell responses.
Andrew Chancellor, Robert Alan Simmons, Rahul C Khanolkar, Vladimir Nosi, Aisha Beshirova, Raffaele Calogero

J Exp Med· September 2023

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Targeting CCR7-PI3Kγ overcomes resistance to tyrosine kinase inhibitors in ALK-rearranged lymphoma.
Cristina Mastini, Marco Campisi, Enrico Patrucco, Giulia Mura, Antonio Ferreira, Raffaele Calogero

Sci Transl Med· June 2023

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CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system.
Simone Pernice, Roberta Sirovich, Elena Grassi, Marco Viviani, Martina Ferri, Raffaele A Calogero

Bioinformatics· May 2023

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p140Cap inhibits β-Catenin in the breast cancer stem cell compartment instructing a protective anti-tumor immune response.
Vincenzo Salemme, Mauro Vedelago, Alessandro Sarcinella, Federico Moietta, Alessio Piccolantonio, Raffaele Calogero

Nat Commun· May 2023

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Circulating hsa-miR-5096 predicts F-FDG PET/CT positivity and modulates somatostatin receptor 2 expression: a novel miR-based assay for pancreatic neuroendocrine tumors.
Martine Bocchini, Marcella Tazzari, Sara Ravaioli, Filippo Piccinini, Flavia Foca, Raffaele Adolfo Calogero

Front Oncol· May 2023

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Regulation of CD45 phosphatase by oncogenic ALK in anaplastic large cell lymphoma.
Giulia Mura, Elif Karaca Atabay, Matteo Menotti, Cinzia Martinengo, Chiara Ambrogio, Raffaele A Calogero

Front Oncol· January 2023

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Single-Cell RNAseq Data QC and Preprocessing.
Martina Olivero, Raffaele A Calogero

Methods Mol Biol· December 2022

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Single-Cell RNAseq Complexity Reduction.
Francesca Cordero, Raffaele A Calogero

Methods Mol Biol· December 2022

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Functional-Feature-Based Data Reduction Using Sparsely Connected Autoencoders.
Luca Alessandri, Raffaele A Calogero

Methods Mol Biol· December 2022

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Single-Cell RNAseq Clustering.
Marco Beccuti, Raffaele A Calogero

Methods Mol Biol· December 2022

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Using "Galaxy-rCASC": A Public Galaxy Instance for Single-Cell RNA-Seq Data Analysis.
Pietro Mandreoli, Luca Alessandri, Raffaele A Calogero, Marco Antonio Tangaro, Federico Zambelli

Methods Mol Biol· December 2022

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