Publications by authors named "Ralf S Neumann"

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TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences.
Shiva Dahal-Koirala, Gabriel Balaban, Ralf Stefan Neumann, Lonneke Scheffer, Knut Erik Aslaksen Lundin

Brief Bioinform· March 2022

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Comprehensive Analysis of CDR3 Sequences in Gluten-Specific T-Cell Receptors Reveals a Dominant R-Motif and Several New Minor Motifs.
Shiva Dahal-Koirala, Louise Fremgaard Risnes, Ralf Stefan Neumann, Asbjørn Christophersen, Knut E A Lundin

Front Immunol· September 2021

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Circulating CD103 γδ and CD8 T cells are clonally shared with tissue-resident intraepithelial lymphocytes in celiac disease.
Louise F Risnes, Linn M Eggesbø, Stephanie Zühlke, Shiva Dahal-Koirala, Ralf S Neumann

Mucosal Immunol· July 2021

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Single-cell TCR repertoire analysis reveals highly polyclonal composition of human intraepithelial CD8 αβ T lymphocytes in untreated celiac disease.
Linn M Eggesbø, Louise F Risnes, Ralf S Neumann, Knut E A Lundin, Asbjørn Christophersen

Eur J Immunol· June 2021

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T cell receptor repertoire as a potential diagnostic marker for celiac disease.
Ying Yao, Asima Zia, Ralf Stefan Neumann, Milena Pavlovic, Gabriel Balaban

Clin Immunol· January 2021

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Single-cell TCR sequencing of gut intraepithelial γδ T cells reveals a vast and diverse repertoire in celiac disease.
Linn M Eggesbø, Louise F Risnes, Ralf S Neumann, Knut E A Lundin, Asbjørn Christophersen

Mucosal Immunol· March 2020

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On the immune response to barley in celiac disease: Biased and public T-cell receptor usage to a barley unique and immunodominant gluten epitope.
Shiva Dahal-Koirala, Ralf S Neumann, Jørgen Jahnsen, Knut E A Lundin, Ludvig M Sollid

Eur J Immunol· February 2020

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A molecular basis for the T cell response in HLA-DQ2.2 mediated celiac disease.
Yi Tian Ting, Shiva Dahal-Koirala, Hui Shi Keshia Kim, Shuo-Wang Qiao, Ralf S Neumann

Proc Natl Acad Sci U S A· February 2020

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Resident memory CD8 T cells persist for years in human small intestine.
Raquel Bartolomé-Casado, Ole J B Landsverk, Sudhir Kumar Chauhan, Lisa Richter, Danh Phung, Ralf S Neumann

J Exp Med· October 2019

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Efficient T cell-B cell collaboration guides autoantibody epitope bias and onset of celiac disease.
Rasmus Iversen, Bishnudeo Roy, Jorunn Stamnaes, Lene S Høydahl, Kathrin Hnida, Ralf S Neumann

Proc Natl Acad Sci U S A· July 2019

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Discriminative T-cell receptor recognition of highly homologous HLA-DQ2-bound gluten epitopes.
Shiva Dahal-Koirala, Laura Ciacchi, Jan Petersen, Louise Fremgaard Risnes, Ralf Stefan Neumann

J Biol Chem· January 2019

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Unicellular Origin of the Animal MicroRNA Machinery.
Jon Bråte, Ralf S Neumann, Bastian Fromm, Arthur A B Haraldsen, James E Tarver

Curr Biol· October 2018

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Soluble T-cell receptor design influences functional yield in an E. coli chaperone-assisted expression system.
Kristin Støen Gunnarsen, Lene Støkken Høydahl, Ralf Stefan Neumann, Kaare Bjerregaard-Andersen, Nicolay Rustad Nilssen

PLoS One· July 2018

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Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease.
Louise F Risnes, Asbjørn Christophersen, Shiva Dahal-Koirala, Ralf S Neumann, Geir K Sandve

J Clin Invest· June 2018

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A TCRα framework-centered codon shapes a biased T cell repertoire through direct MHC and CDR3β interactions.
Kristin Støen Gunnarsen, Lene Støkken Høydahl, Louise Fremgaard Risnes, Shiva Dahal-Koirala, Ralf Stefan Neumann

JCI Insight· September 2017

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High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease.
Bishnudeo Roy, Ralf S Neumann, Omri Snir, Rasmus Iversen, Geir Kjetil Sandve

J Immunol· July 2017

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Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum.
Jon Bråte, Marcin Adamski, Ralf S Neumann, Kamran Shalchian-Tabrizi, Maja Adamska

Proc Biol Sci· December 2015

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BIR Pipeline for Preparation of Phylogenomic Data.
Surendra Kumar, Anders K Krabberød, Ralf S Neumann, Katerina Michalickova, Sen Zhao

Evol Bioinform Online· May 2015

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BLAST output visualization in the new sequencing era.
Ralf Stefan Neumann, Surendra Kumar, Kamran Shalchian-Tabrizi

Brief Bioinform· July 2014

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BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data.
Ralf Stefan Neumann, Surendra Kumar, Thomas Hendricus Augustus Haverkamp, Kamran Shalchian-Tabrizi

BMC Bioinformatics· May 2014

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