Publications by authors named "Raphael Leplae"

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Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes.
Rob Van Houdt, Raphael Leplae, Gipsi Lima-Mendez, Max Mergeay, Ariane Toussaint

Mob DNA· April 2012

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A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules.
Gipsi Lima-Mendez, Ariane Toussaint, Raphael Leplae

Res Microbiol· October 2011

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Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families.
Raphaël Leplae, Damien Geeraerts, Régis Hallez, Julien Guglielmini, Pierre Drèze

Nucleic Acids Res· July 2011

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Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop.
James Rodney Brister, Yiming Bao, Carla Kuiken, Elliot J Lefkowitz, Philippe Le Mercier, Raphael Leplae

Viruses· October 2010

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ACLAME: a CLAssification of Mobile genetic Elements, update 2010.
Raphaël Leplae, Gipsi Lima-Mendez, Ariane Toussaint

Nucleic Acids Res· January 2010

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Genetic diversity of Group A Streptococcus M protein: implications for typing and vaccine development.
Pierre R Smeesters, Patrick Mardulyn, Anne Vergison, Raphaël Leplae, Laurence Van Melderen

Vaccine· October 2008

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Reticulate representation of evolutionary and functional relationships between phage genomes.
Gipsi Lima-Mendez, Jacques Van Helden, Ariane Toussaint, Raphaël Leplae

Mol Biol Evol· April 2008

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Prophinder: a computational tool for prophage prediction in prokaryotic genomes.
Gipsi Lima-Mendez, Jacques Van Helden, Ariane Toussaint, Raphaël Leplae

Bioinformatics· March 2008

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Analysis of the phage sequence space: the benefit of structured information.
Gipsi Lima-Mendez, Ariane Toussaint, Raphaël Leplae

Virology· September 2007

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PhiGO, a phage ontology associated with the ACLAME database.
Ariane Toussaint, Gipsi Lima-Mendez, Raphaël Leplae

Res Microbiol· September 2007

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A first global analysis of plasmid encoded proteins in the ACLAME database.
Raphaël Leplae, Gipsi Lima-Mendez, Ariane Toussaint

FEMS Microbiol Rev· November 2006

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Variations in plant metallothioneins: the heavy metal hyperaccumulator Thlaspi caerulescens as a study case.
Nancy H Roosens, Raphael Leplae, Catherine Bernard, Nathalie Verbruggen

Planta· November 2005

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Mobile genetic elements: the agents of open source evolution.
Laura S Frost, Raphael Leplae, Anne O Summers, Ariane Toussaint

Nat Rev Microbiol· September 2005

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Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
Raúl Méndez, Raphaël Leplae, Marc F Lensink, Shoshana J Wodak

Proteins· August 2005

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Evidence for copper homeostasis function of metallothionein (MT3) in the hyperaccumulator Thlaspi caerulescens.
Nancy H Roosens, Catherine Bernard, Raphael Leplae, Nathalie Verbruggen

FEBS Lett· November 2004

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ACLAME: a CLAssification of Mobile genetic Elements.
Raphaël Leplae, Aline Hebrant, Shoshana J Wodak, Ariane Toussaint

Nucleic Acids Res· January 2004

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The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids.
Ariane Toussaint, Christophe Merlin, Sébastien Monchy, M Abderrafi Benotmane, Raphaël Leplae

Appl Environ Microbiol· August 2003

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Assessment of blind predictions of protein-protein interactions: current status of docking methods.
Raúl Méndez, Raphaël Leplae, Leonardo De Maria, Shoshana J Wodak

Proteins· July 2003

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MaxBench: evaluation of sequence and structure comparison methods.
Raphael Leplae, Tim J P Hubbard

Bioinformatics· March 2002

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