Publications by authors named "Ravi Allada"

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Circadian Mechanisms in Medicine.
Ravi Allada, Joseph Bass

N Engl J Med· February 2021

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Universal method for robust detection of circadian state from gene expression.
Rosemary Braun, William L Kath, Marta Iwanaszko, Elzbieta Kula-Eversole, Sabra M Abbott, Kathryn J Reid, Phyllis C Zee, Ravi Allada

Proc Natl Acad Sci U S A· September 2018

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Circadian Clocks, Daily Stress, and Neurodegenerative Disease.
Eugene Nyamugenda, Clark Rosensweig, Ravi Allada

Annu Rev Pathol· January 2025

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Binding profiles for 961 and transcription factors reveal tissue-specific regulatory relationships.
Michelle Kudron, Louis Gevirtzman, Alec Victorsen, Bridget C Lear, Jiahao Gao, Ravi Allada

Genome Res· December 2024

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Temperature-driven coordination of circadian transcriptional regulation.
Bingxian Xu, Dae-Sung Hwangbo, Sumit Saurabh, Clark Rosensweig, Ravi Allada

PLoS Comput Biol· April 2024

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The Negative Effects of Travel on Student Athletes Through Sleep and Circadian Disruption.
H Craig Heller, Erik Herzog, Allison Brager, Gina Poe, Ravi Allada

J Biol Rhythms· February 2024

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Binding profiles for 954 Drosophila and transcription factors reveal tissue specific regulatory relationships.
Michelle Kudron, Louis Gevirtzman, Alec Victorsen, Bridget C Lear, Jiahao Gao, Ravi Allada

bioRxiv· January 2024

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Temperature-driven coordination of circadian transcriptome regulation.
Bingxian Xu, Dae-Sung Hwangbo, Sumit Saurabh, Clark Rosensweig, Ravi Allada

bioRxiv· November 2023

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Dietary Restriction Impacts Peripheral Circadian Clock Output Important for Longevity in .
Dae-Sung Hwangbo, Yong-Jae Kwon, Marta Iwanaszko, Peng Jiang, Ladan Abbasi, Ravi Allada

bioRxiv· January 2023

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SleepMat: a new behavioral analysis software program for sleep and circadian rhythms.
Shiju Sisobhan, Clark Rosensweig, Bridget C Lear, Ravi Allada

Sleep· December 2022

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Circadian programming of the ellipsoid body sleep homeostat in .
Tomas Andreani, Clark Rosensweig, Shiju Sisobhan, Emmanuel Ogunlana, William Kath, Ravi Allada

Elife· June 2022

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The microtubule-associated protein Tau suppresses the axonal distribution of PDF neuropeptide and mitochondria in circadian clock neurons.
Melanie Y Zhang, Bridget C Lear, Ravi Allada

Hum Mol Genet· March 2022

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Glial immune-related pathways mediate effects of closed head traumatic brain injury on behavior and lethality in Drosophila.
Bart van Alphen, Samuel Stewart, Marta Iwanaszko, Fangke Xu, Keyin Li, Ravi Allada

PLoS Biol· January 2022

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The E3 ubiquitin ligase adaptor links the core circadian clock to neuropeptide and behavioral rhythms.
Jongbin Lee, Chunghun Lim, Tae Hee Han, Tomas Andreani, Matthew Moye, Ravi Allada

Proc Natl Acad Sci U S A· November 2021

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Circadian Mechanisms in Medicine. Reply.
Ravi Allada, Joseph Bass

N Engl J Med· May 2021

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Comment on "Circadian rhythms in the absence of the clock gene ".
Elan Ness-Cohn, Ravi Allada, Rosemary Braun

Science· April 2021

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Phosphatase of Regenerating Liver-1 Selectively Times Circadian Behavior in Darkness via Function in PDF Neurons and Dephosphorylation of TIMELESS.
Elżbieta Kula-Eversole, Da Hyun Lee, Ima Samba, Evrim Yildirim, Daniel C Levine, Ravi Allada

Curr Biol· January 2021

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A deep sleep stage in with a functional role in waste clearance.
Bart van Alphen, Evan R Semenza, Melvyn Yap, Bruno van Swinderen, Ravi Allada

Sci Adv· January 2021

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TimeTrial: An Interactive Application for Optimizing the Design and Analysis of Transcriptomic Time-Series Data in Circadian Biology Research.
Elan Ness-Cohn, Marta Iwanaszko, William L Kath, Ravi Allada, Rosemary Braun

J Biol Rhythms· October 2020

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A Circuit Encoding Absolute Cold Temperature in Drosophila.
Michael H Alpert, Dominic D Frank, Evan Kaspi, Matthieu Flourakis, Emanuela E Zaharieva, Ravi Allada

Curr Biol· June 2020

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Ataxin2 functions via CrebA to mediate Huntingtin toxicity in circadian clock neurons.
Fangke Xu, Elzbieta Kula-Eversole, Marta Iwanaszko, Chunghun Lim, Ravi Allada

PLoS Genet· October 2019

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Circadian Clocks Function in Concert with Heat Shock Organizing Protein to Modulate Mutant Huntingtin Aggregation and Toxicity.
Fangke Xu, Elzbieta Kula-Eversole, Marta Iwanaszko, Alan L Hutchison, Aaron Dinner, Ravi Allada

Cell Rep· April 2019

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Reply to Laing et al.: Accurate prediction of circadian time across platforms.
Rosemary Braun, William L Kath, Marta Iwanaszko, Elzbieta Kula-Eversole, Sabra M Abbott, Ravi Allada

Proc Natl Acad Sci U S A· March 2019

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Bootstrapping and Empirical Bayes Methods Improve Rhythm Detection in Sparsely Sampled Data.
Alan L Hutchison, Ravi Allada, Aaron R Dinner

J Biol Rhythms· August 2018

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Guidelines for Genome-Scale Analysis of Biological Rhythms.
Michael E Hughes, Katherine C Abruzzi, Ravi Allada, Ron Anafi, Alaaddin Bulak Arpat

J Biol Rhythms· October 2017

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