Publications by authors named "Recep Colak"

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ELASPIC web-server: proteome-wide structure-based prediction of mutation effects on protein stability and binding affinity.
Daniel K Witvliet, Alexey Strokach, Andrés Felipe Giraldo-Forero, Joan Teyra, Recep Colak

Bioinformatics· May 2016

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JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis.
Recep Colak, TaeHyung Kim, Hilal Kazan, Yoomi Oh, Miguel Cruz

Bioinformatics· January 2016

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Semi-supervised Learning Predicts Approximately One Third of the Alternative Splicing Isoforms as Functional Proteins.
Yanqi Hao, Recep Colak, Joan Teyra, Carles Corbi-Verge, Alexander Ignatchenko

Cell Rep· July 2015

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Combining structural modeling with ensemble machine learning to accurately predict protein fold stability and binding affinity effects upon mutation.
Niklas Berliner, Joan Teyra, Recep Colak, Sebastian Garcia Lopez, Philip M Kim

PLoS One· June 2015

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Distinct types of disorder in the human proteome: functional implications for alternative splicing.
Recep Colak, TaeHyung Kim, Magali Michaut, Mark Sun, Manuel Irimia

PLoS Comput Biol· April 2013

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The evolutionary landscape of alternative splicing in vertebrate species.
Nuno L Barbosa-Morais, Manuel Irimia, Qun Pan, Hui Y Xiong, Serge Gueroussov, Recep Colak

Science· December 2012

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Tissue-specific alternative splicing remodels protein-protein interaction networks.
Jonathan D Ellis, Miriam Barrios-Rodiles, Recep Colak, Manuel Irimia, Taehyung Kim

Mol Cell· June 2012

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An omics perspective of protein disorder.
Jeremy Bellay, Magali Michaut, TaeHyung Kim, Sangjo Han, Recep Colak

Mol Biosyst· January 2012

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Module discovery by exhaustive search for densely connected, co-expressed regions in biomolecular interaction networks.
Recep Colak, Flavia Moser, Jeffrey Shih-Chieh Chu, Alexander Schönhuth, Nansheng Chen

PLoS One· October 2010

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Inferring cancer subnetwork markers using density-constrained biclustering.
Phuong Dao, Recep Colak, Raheleh Salari, Flavia Moser, Elai Davicioni

Bioinformatics· September 2010

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PATIKAmad: putting microarray data into pathway context.
Ozgun Babur, Recep Colak, Emek Demir, Ugur Dogrusoz

Proteomics· June 2008

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