Publications by authors named "Rembert Pieper"

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Analysis of Crosstalk Between Pathogens and Immune System in Human Airway Mucus via Machine Learning-Enhanced DIA Mass Spectrometry.
Rembert Pieper, Vinod Krishna, Thomas N Gaitanos, Jeroen Aerssens

Proteomics Clin Appl· November 2025

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Predictive biomarkers for latent Mycobacterium tuberculosis infection.
Harinder Singh, Norberto Gonzalez-Juarbe, Rembert Pieper, Yanbao Yu, Sanjay Vashee

Tuberculosis (Edinb)· July 2024

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Genetic Diversity and Acquired Drug Resistance Mutations Detected by Deep Sequencing in Virologic Failures among Antiretroviral Treatment Experienced Human Immunodeficiency Virus-1 Patients in a Pastoralist Region of Ethiopia.
Erdaw Tachbele, Samuel Kyobe, Fred Ashaba Katabazi, Edgar Kigozi, Savannah Mwesigwa, Rembert Pieper

Infect Drug Resist· November 2021

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Protein and Microbial Biomarkers in Sputum Discern Acute and Latent Tuberculosis in Investigation of Pastoral Ethiopian Cohort.
Milkessa HaileMariam, Yanbao Yu, Harinder Singh, Takele Teklu, Biniam Wondale, Rembert Pieper

Front Cell Infect Microbiol· July 2021

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Urethral Catheter Biofilms Reveal Plasticity in Bacterial Composition and Metabolism and Withstand Host Immune Defenses in Hypoxic Environment.
Yanbao Yu, Harinder Singh, Tamara Tsitrin, Shiferaw Bekele, Yi-Han Lin, Rembert Pieper

Front Med (Lausanne)· June 2021

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Protein signatures from blood plasma and urine suggest changes in vascular function and IL-12 signaling in elderly with a history of chronic diseases compared with an age-matched healthy cohort.
Yanbao Yu, Harinder Singh, Keehwan Kwon, Tamara Tsitrin, Joann Petrini, Rembert Pieper

Geroscience· April 2021

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Molecular epidemiology of clinical Mycobacterium tuberculosis complex isolates in South Omo, Southern Ethiopia.
Biniam Wondale, Kwon Keehwan, Girmay Medhin, Takele Teklu, Temesgen Mohammed, Rembert Pieper

BMC Infect Dis· October 2020

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Differences in plasma proteomes for active tuberculosis, latent tuberculosis and non-tuberculosis mycobacterial lung disease patients with and without ESAT-6/CFP10 stimulation.
Takele Teklu, Biniam Wondale, Biruhalem Taye, Milkessa Hailemariam, Shiferaw Bekele, Rembert Pieper

Proteome Sci· October 2020

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Gut Microbial Changes in Diabetic db/db Mice and Recovery of Microbial Diversity upon Pirfenidone Treatment.
Harinder Singh, Satoshi Miyamoto, Manjula Darshi, Manolito G Torralba, Keehwan Kwon, Rembert Pieper

Microorganisms· September 2020

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Persistent Gut Microbial Dysbiosis in Children with Acute Lymphoblastic Leukemia (ALL) During Chemotherapy.
Seesandra V Rajagopala, Harinder Singh, Yanbao Yu, Keri B Zabokrtsky, Manolito G Torralba, Rembert Pieper

Microb Ecol· May 2020

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Detection of Neutrophil Extracellular Traps in Urine.
Yanbao Yu, Keehwan Kwon, Rembert Pieper

Methods Mol Biol· March 2020

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Using Proteomics to Identify Inflammation During Urinary Tract Infection.
Yanbao Yu, Rembert Pieper

Methods Mol Biol· March 2020

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Gastro-intestinal and oral microbiome signatures associated with healthy aging.
Harinder Singh, Manolito G Torralba, Kelvin J Moncera, Lauren DiLello, Joann Petrini, Rembert Pieper

Geroscience· December 2019

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and Persist in Polymicrobial Urethral Catheter Biofilms Examined in Longitudinal Profiles at the Proteomic Level.
Yanbao Yu, Tamara Tsitrin, Shiferaw Bekele, Vishal Thovarai, Manolito G Torralba, Rembert Pieper

Biochem Insights· September 2019

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Proteome Profiled in Polymicrobial Urethral Catheter Biofilms.
Yanbao Yu, Tamara Tsitrin, Harinder Singh, Sebastian N Doerfert, Maria V Sizova, Rembert Pieper

Proteomes· December 2018

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ProteoStorm: An Ultrafast Metaproteomics Database Search Framework.
Doruk Beyter, Miin S Lin, Yanbao Yu, Rembert Pieper, Vineet Bafna

Cell Syst· October 2018

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S-Trap, an Ultrafast Sample-Preparation Approach for Shotgun Proteomics.
Milkessa HaileMariam, Rodrigo Vargas Eguez, Harinder Singh, Shiferaw Bekele, Gobena Ameni, Rembert Pieper

J Proteome Res· September 2018

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Phenotypic and genotypic drug sensitivity of complex isolated from South Omo Zone, Southern Ethiopia.
Biniam Wondale, Girmay Medhin, Gemeda Abebe, Samuel Tolosa, Temesgen Mohammed, Rembert Pieper

Infect Drug Resist· September 2018

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Type 1 Diabetes: Urinary Proteomics and Protein Network Analysis Support Perturbation of Lysosomal Function.
Harinder Singh, Yanbao Yu, Moo-Jin Suh, Manolito G Torralba, Robert D Stenzel, Rembert Pieper

Theranostics· April 2018

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Potential Immunological Biomarkers for Detection of Mycobacterium tuberculosis Infection in a Setting Where M. tuberculosis Is Endemic, Ethiopia.
Takele Teklu, Keehwan Kwon, Biniam Wondale, Milkessa HaileMariam, Aboma Zewude, Rembert Pieper

Infect Immun· April 2018

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Microbial metagenome of urinary tract infection.
Ahmed Moustafa, Weizhong Li, Harinder Singh, Kelvin J Moncera, Manolito G Torralba, Rembert Pieper

Sci Rep· March 2018

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Latent tuberculosis infection and associated risk indicators in pastoral communities in southern Ethiopia: a community based cross-sectional study.
Takele Teklu, Mengistu Legesse, Girmay Medhin, Aboma Zewude, Mahlet Chanyalew, Rembert Pieper

BMC Public Health· February 2018

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Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions.
Anders Wallqvist, Hao Wang, Nela Zavaljevski, Vesna Memišević, Keehwan Kwon, Rembert Pieper

PLoS One· December 2017

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Quick 96FASP for high throughput quantitative proteome analysis.
Yanbao Yu, Shiferaw Bekele, Rembert Pieper

J Proteomics· August 2017

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Nontuberculosis mycobacteria are the major causes of tuberculosis like lesions in cattle slaughtered at Bahir Dar Abattoir, northwestern Ethiopia.
Anwar Nuru, Aboma Zewude, Temesgen Mohammed, Biniam Wondale, Laikemariam Teshome, Rembert Pieper

BMC Vet Res· August 2017

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