Publications by authors named "Richard A Notebaart"

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An enzyme activation network reveals extensive regulatory crosstalk between metabolic pathways.
Sultana Mohammed Al Zubaidi, Muhammad Ibtisam Nasar, Richard A Notebaart, Markus Ralser, Mohammad Tauqeer Alam

Mol Syst Biol· July 2025

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Integrative systems biology approaches for analyzing microbiome dysbiosis and species interactions.
Syed Sabih Ur Rehman, Muhammad Ibtisam Nasar, Cristina S Mesquita, Souhaila Al Khodor, Richard A Notebaart

Brief Bioinform· July 2025

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Ethylene glycol is metabolized to ethanol and acetate and induces expression of bacterial microcompartments in .
Alexander Dank, Yue Liu, Xin Wen, Fan Lin, Anne Wiersma, Richard A Notebaart

Heliyon· July 2024

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Impact of vitamin B on rhamnose metabolism, stress defense and in-vitro virulence of Listeria monocytogenes.
Zhe Zeng, Lucas M Wijnands, Sjef Boeren, Eddy J Smid, Richard A Notebaart

Int J Food Microbiol· January 2024

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Dynamic genome-scale modeling of Saccharomyces cerevisiae unravels mechanisms for ester formation during alcoholic fermentation.
William T Scott, David Henriques, Eddy J Smid, Richard A Notebaart, Eva Balsa-Canto

Biotechnol Bioeng· July 2023

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Modulating CRISPR-Cas Genome Editing Using Guide-Complementary DNA Oligonucleotides.
Thomas Swartjes, Peng Shang, Dennis T M van den Berg, Tim Künne, Niels Geijsen, Richard A Notebaart

CRISPR J· August 2022

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Underground metabolism as a rich reservoir for pathway engineering.
Szabolcs Cselgő Kovács, Balázs Szappanos, Roland Tengölics, Richard A Notebaart, Balázs Papp

Bioinformatics· May 2022

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Metabolic flux sampling predicts strain-dependent differences related to aroma production among commercial wine yeasts.
William T Scott, Eddy J Smid, David E Block, Richard A Notebaart

Microb Cell Fact· October 2021

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Nitrogenous Compound Utilization and Production of Volatile Organic Compounds among Commercial Wine Yeasts Highlight Strain-Specific Metabolic Diversity.
William T Scott, Oscar van Mastrigt, David E Block, Richard A Notebaart, Eddy J Smid

Microbiol Spectr· September 2021

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Anaerobic Growth of on Rhamnose Is Stimulated by Vitamin B and Bacterial Microcompartment-Dependent 1,2-Propanediol Utilization.
Zhe Zeng, Siming Li, Sjef Boeren, Eddy J Smid, Richard A Notebaart

mSphere· August 2021

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Bacterial Microcompartment-Dependent 1,2-Propanediol Utilization of .
Alexander Dank, Zhe Zeng, Sjef Boeren, Richard A Notebaart, Eddy J Smid

Front Microbiol· May 2021

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Stimulation of cholesterol biosynthesis in mitochondrial complex I-deficiency lowers reductive stress and improves motor function and survival in mice.
Tom J J Schirris, Sergio Rossell, Ria de Haas, Sanne J C M Frambach, Charlotte A Hoogstraten, Richard A Notebaart

Biochim Biophys Acta Mol Basis Dis· April 2021

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Bacterial Microcompartments Coupled with Extracellular Electron Transfer Drive the Anaerobic Utilization of Ethanolamine in Listeria monocytogenes.
Zhe Zeng, Sjef Boeren, Varaang Bhandula, Samuel H Light, Eddy J Smid, Richard A Notebaart

mSystems· April 2021

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Suboptimal Global Transcriptional Response Increases the Harmful Effects of Loss-of-Function Mutations.
Károly Kovács, Zoltán Farkas, Djordje Bajić, Dorottya Kalapis, Andreea Daraba, Richard A Notebaart

Mol Biol Evol· March 2021

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Bacterial Microcompartment-Dependent 1,2-Propanediol Utilization Stimulates Anaerobic Growth of EGDe.
Zhe Zeng, Eddy J Smid, Sjef Boeren, Richard A Notebaart, Tjakko Abee

Front Microbiol· November 2019

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CRISPR-Directed Microbiome Manipulation across the Food Supply Chain.
Rodolphe Barrangou, Richard A Notebaart

Trends Microbiol· June 2019

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Enzyme promiscuity shapes adaptation to novel growth substrates.
Gabriela I Guzmán, Troy E Sandberg, Ryan A LaCroix, Ákos Nyerges, Henrietta Papp, Richard A Notebaart

Mol Syst Biol· April 2019

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Delivery of genome editing tools by bacterial extracellular vesicles.
Yue Liu, Eddy J Smid, Tjakko Abee, Richard A Notebaart

Microb Biotechnol· January 2019

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CRISPR-Cas genome engineering of esterase activity in Saccharomyces cerevisiae steers aroma formation.
Alexander Dank, Eddy J Smid, Richard A Notebaart

BMC Res Notes· September 2018

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Tissue Metabolic Changes Drive Cytokine Responses to Mycobacterium tuberculosis.
Ekta Lachmandas, Ana B Rios-Miguel, Valerie A C M Koeken, Eva van der Pasch, Vinod Kumar, Richard A Notebaart

J Infect Dis· June 2018

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Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.
Arjan van Laarhoven, Sofiati Dian, Raúl Aguirre-Gamboa, Julian Avila-Pacheco, Isis Ricaño-Ponce, Richard A Notebaart

Lancet Infect Dis· May 2018

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Underground metabolism: network-level perspective and biotechnological potential.
Richard A Notebaart, Bálint Kintses, Adam M Feist, Balázs Papp

Curr Opin Biotechnol· February 2018

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Rewiring monocyte glucose metabolism via C-type lectin signaling protects against disseminated candidiasis.
Jorge Domínguez-Andrés, Rob J W Arts, Rob Ter Horst, Mark S Gresnigt, Sanne P Smeekens, Richard A Notebaart

PLoS Pathog· September 2017

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Glutaminolysis and Fumarate Accumulation Integrate Immunometabolic and Epigenetic Programs in Trained Immunity.
Rob J W Arts, Boris Novakovic, Rob Ter Horst, Agostinho Carvalho, Siroon Bekkering, Richard A Notebaart

Cell Metab· December 2016

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Host and Environmental Factors Influencing Individual Human Cytokine Responses.
Rob Ter Horst, Martin Jaeger, Sanne P Smeekens, Marije Oosting, Morris A Swertz, Richard A Notebaart

Cell· November 2016

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