Publications by authors named "Richard Stefl"

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Assembly of the Xrn2/Rat1-Rai1-Rtt103 termination complexes in mesophilic and thermophilic organisms.
Alzbeta Dikunova, Nikola Noskova, Jan H Overbeck, Martin Polak, David Stelzig, Richard Stefl

Structure· February 2025

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Tetrameric INTS6-SOSS1 complex facilitates DNA:RNA hybrid autoregulation at double-strand breaks.
Qilin Long, Kamal Ajit, Katerina Sedova, Vojtech Haluza, Richard Stefl

Nucleic Acids Res· November 2024

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Sequence and structural determinants of RNAPII CTD phase-separation and phosphorylation by CDK7.
Katerina Linhartova, Francesco Luca Falginella, Martin Matl, Marek Sebesta, Robert Vácha, Richard Stefl

Nat Commun· October 2024

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Structural and functional characterization of the interaction between the influenza A virus RNA polymerase and the CTD of host RNA polymerase II.
Jeremy Keown, Alaa Baazaoui, Marek Šebesta, Richard Štefl, Loïc Carrique

J Virol· May 2024

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The phosphorylated trimeric SOSS1 complex and RNA polymerase II trigger liquid-liquid phase separation at double-strand breaks.
Qilin Long, Marek Sebesta, Katerina Sedova, Vojtech Haluza, Adele Alagia, Richard Stefl

Cell Rep· December 2023

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Dicer structure and function: conserved and evolving features.
David Zapletal, Karel Kubicek, Petr Svoboda, Richard Stefl

EMBO Rep· July 2023

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Human senataxin is a bona fide R-loop resolving enzyme and transcription termination factor.
Zdenka Hasanova, Veronika Klapstova, Odil Porrua, Richard Stefl, Marek Sebesta

Nucleic Acids Res· April 2023

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Structural and functional basis of mammalian microRNA biogenesis by Dicer.
David Zapletal, Eliska Taborska, Josef Pasulka, Radek Malik, Karel Kubicek, Richard Stefl

Mol Cell· November 2022

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Cooperation between intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly.
Aiste Kasiliauskaite, Karel Kubicek, Tomas Klumpler, Martina Zanova, David Zapletal, Richard Stefl

Nucleic Acids Res· June 2022

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PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC.
Lisa-Marie Appel, Vedran Franke, Melania Bruno, Irina Grishkovskaya, Aiste Kasiliauskaite, Richard Stefl

Nat Commun· October 2021

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Yeast Spt6 Reads Multiple Phosphorylation Patterns of RNA Polymerase II C-Terminal Domain In Vitro.
Pavel Brázda, Magdaléna Krejčíková, Aiste Kasiliauskaite, Eliška Šmiřáková, Tomáš Klumpler

J Mol Biol· June 2020

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Termination of non-coding transcription in yeast relies on both an RNA Pol II CTD interaction domain and a CTD-mimicking region in Sen1.
Zhong Han, Olga Jasnovidova, Nouhou Haidara, Agnieszka Tudek, Karel Kubicek, Richard Stefl

EMBO J· April 2020

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Efficient and robust preparation of tyrosine phosphorylated intrinsically disordered proteins.
Pavel Brázda, Ondrej Šedo, Karel Kubíček, Richard Štefl

Biotechniques· July 2019

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Structure and dynamics of the RNAPII CTDsome with Rtt103.
Olga Jasnovidova, Tomas Klumpler, Karel Kubicek, Sergei Kalynych, Pavel Plevka, Richard Stefl

Proc Natl Acad Sci U S A· October 2017

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Structural insight into recognition of phosphorylated threonine-4 of RNA polymerase II C-terminal domain by Rtt103p.
Olga Jasnovidova, Magdalena Krejcikova, Karel Kubicek, Richard Stefl

EMBO Rep· June 2017

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RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3'-end extended forms of snRNAs.
Dominika Hrossova, Tomas Sikorsky, David Potesil, Marek Bartosovic, Josef Pasulka, Richard Stefl

Nucleic Acids Res· April 2015

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Molecular basis for coordinating transcription termination with noncoding RNA degradation.
Agnieszka Tudek, Odil Porrua, Tomasz Kabzinski, Michael Lidschreiber, Karel Kubicek, Richard Stefl

Mol Cell· August 2014

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Structure and semi-sequence-specific RNA binding of Nrd1.
Veronika Bacikova, Josef Pasulka, Karel Kubicek, Richard Stefl

Nucleic Acids Res· July 2014

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The CTD code of RNA polymerase II: a structural view.
Olga Jasnovidova, Richard Stefl

Wiley Interdiscip Rev RNA· June 2013

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Recognition of asymmetrically dimethylated arginine by TDRD3.
Tomas Sikorsky, Fruzsina Hobor, Eva Krizanova, Josef Pasulka, Karel Kubicek, Richard Stefl

Nucleic Acids Res· December 2012

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In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination.
Odil Porrua, Fruzsina Hobor, Jocelyne Boulay, Karel Kubicek, Yves D'Aubenton-Carafa, Richard Stefl

EMBO J· October 2012

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Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1.
Karel Kubicek, Hana Cerna, Peter Holub, Josef Pasulka, Dominika Hrossova, Richard Stefl

Genes Dev· September 2012

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Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation.
Peter Holub, Jana Lalakova, Hana Cerna, Josef Pasulka, Marie Sarazova, Richard Stefl

Nucleic Acids Res· July 2012

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1H, 13C, and 15N resonance assignments for the CTD-interacting domain of Nrd1 bound to Ser5-phosphorylated CTD of RNA polymerase II.
Karel Kubíček, Josef Pasulka, Hana Černá, Frank Löhr, Richard Štefl

Biomol NMR Assign· October 2011

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Recognition of transcription termination signal by the nuclear polyadenylated RNA-binding (NAB) 3 protein.
Fruzsina Hobor, Roberto Pergoli, Karel Kubicek, Dominika Hrossova, Veronika Bacikova, Richard Stefl

J Biol Chem· February 2011

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