Publications by authors named "Robert D Oeffner"

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AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination.
Thomas C Terwilliger, Dorothee Liebschner, Tristan I Croll, Christopher J Williams, Airlie J McCoy, Robert D Oeffner

Nat Methods· January 2024

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Accelerating crystal structure determination with iterative AlphaFold prediction.
Thomas C Terwilliger, Pavel V Afonine, Dorothee Liebschner, Tristan I Croll, Airlie J McCoy, Robert D Oeffner

Acta Crystallogr D Struct Biol· March 2023

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Putting AlphaFold models to work with phenix.process_predicted_model and ISOLDE.
Robert D Oeffner, Tristan I Croll, Claudia Millán, Billy K Poon, Christopher J Schlicksup

Acta Crystallogr D Struct Biol· November 2022

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Phasertng: directed acyclic graphs for crystallographic phasing.
Airlie J McCoy, Duncan H Stockwell, Massimo D Sammito, Robert D Oeffner, Kaushik S Hatti

Acta Crystallogr D Struct Biol· January 2021

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Measuring and using information gained by observing diffraction data.
Randy J Read, Robert D Oeffner, Airlie J McCoy

Acta Crystallogr D Struct Biol· March 2020

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Factors influencing estimates of coordinate error for molecular replacement.
Kaushik S Hatti, Airlie J McCoy, Robert D Oeffner, Massimo D Sammito, Randy J Read

Acta Crystallogr D Struct Biol· January 2020

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Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.
Dorothee Liebschner, Pavel V Afonine, Matthew L Baker, Gábor Bunkóczi, Vincent B Chen, Robert D Oeffner

Acta Crystallogr D Struct Biol· October 2019

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On the application of the expected log-likelihood gain to decision making in molecular replacement.
Robert D Oeffner, Pavel V Afonine, Claudia Millán, Massimo Sammito, Isabel Usón

Acta Crystallogr D Struct Biol· April 2018

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Gyre and gimble: a maximum-likelihood replacement for Patterson correlation refinement.
Airlie J McCoy, Robert D Oeffner, Claudia Millán, Massimo Sammito, Isabel Usón

Acta Crystallogr D Struct Biol· April 2018

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Exploiting distant homologues for phasing through the generation of compact fragments, local fold refinement and partial solution combination.
Claudia Millán, Massimo Domenico Sammito, Airlie J McCoy, Andrey F Ziem Nascimento, Giovanna Petrillo, Robert D Oeffner

Acta Crystallogr D Struct Biol· April 2018

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Ab initio solution of macromolecular crystal structures without direct methods.
Airlie J McCoy, Robert D Oeffner, Antoni G Wrobel, Juha R M Ojala, Karl Tryggvason

Proc Natl Acad Sci U S A· April 2017

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Automating crystallographic structure solution and refinement of protein-ligand complexes.
Nathaniel Echols, Nigel W Moriarty, Herbert E Klei, Pavel V Afonine, Gábor Bunkóczi, Robert D Oeffner

Acta Crystallogr D Biol Crystallogr· January 2014

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Improved estimates of coordinate error for molecular replacement.
Robert D Oeffner, Gábor Bunkóczi, Airlie J McCoy, Randy J Read

Acta Crystallogr D Biol Crystallogr· November 2013

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Phaser.MRage: automated molecular replacement.
Gábor Bunkóczi, Nathaniel Echols, Airlie J McCoy, Robert D Oeffner, Paul D Adams

Acta Crystallogr D Biol Crystallogr· November 2013

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The Phenix software for automated determination of macromolecular structures.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Nathaniel Echols, Robert D Oeffner

Methods· September 2011

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