Publications by authors named "Robi D Mitra"

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SMURF: soft-segmentation for single-cell reconstruction and topological analysis of spatial transcriptomic data.
Juanru Guo, Simona Sarafinovska, Ryan A Hagenson, Mark C Valentine, David Y Chen, Robi D Mitra

bioRxiv· November 2025

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Inducible Calling Cards: Developing Mouse Reagents for Experimentally Controlled Transposon Insertion .
Simona Sarafinovska, Arthi Venkatesan, Titilope Akinwe, Alexander Chamessian, Xuhua Chen, Robi D Mitra

bioRxiv· November 2025

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Whole-genome sequencing reveals individual and cohort level insights into chromosome 9p syndromes.
Yingxi Wang, Eleanor I Sams, Rachel Slaugh, Sandra Crocker, Emily Cordova Hurtado, Robi D Mitra

Genome Med· October 2025

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Scalable transcription factor mapping uncovers the regulatory dynamics of natural and synthetic transcription factors in human T cell states.
Riley D Z Mullins, Jesse Zaretsky, Emily Stoller, Michael Moore, Oliver Takacsi-Nagy, Robi D Mitra

bioRxiv· October 2025

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EGR1 drives sex-differences in glioblastoma tumorigenicity.
Tamara J Abou-Antoun, Lorida Llaci, Jason P Wong, Lihua Yang, Nicole M Warrington, Robi D Mitra

bioRxiv· May 2025

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Prior epigenetic status predicts future susceptibility to seizures in mice.
Benjamin D Boros, Mariam A Gachechiladze, Juanru Guo, Dylan A Galloway, Shayna M Mueller, Robi D Mitra

bioRxiv· March 2025

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Whole-Genome Sequencing Reveals Individual and Cohort Level Insights into Chromosome 9p Syndromes.
Yingxi Wang, Eleanor I Sams, Rachel Slaugh, Sandra Crocker, Emily Cordova Hurtado, Robi D Mitra

medRxiv· March 2025

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MYT1L deficiency impairs excitatory neuron trajectory during cortical development.
Allen Yen, Simona Sarafinovska, Xuhua Chen, Dominic D Skinner, Fatjon Leti, Robi D Mitra

Nat Commun· November 2024

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MYT1L deficiency impairs excitatory neuron trajectory during cortical development.
Allen Yen, Xuhua Chen, Dominic D Skinner, Fatjon Leti, MariaLynn Crosby, Robi D Mitra

bioRxiv· March 2024

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Pycallingcards: an integrated environment for visualizing, analyzing, and interpreting Calling Cards data.
Juanru Guo, Wenjin Zhang, Xuhua Chen, Allen Yen, Lucy Chen, Robi D Mitra

Bioinformatics· February 2024

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Correction: Calling Cards: A Customizable Platform to Longitudinally Record Protein-DNA Interactions Over Time in Cells and Tissues.
Allen Yen, Chase Mateusiak, Simona Sarafinovska, Mariam A Gachechiladze, Juanru Guo, Robi D Mitra

Curr Protoc· October 2023

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Calling Cards: A Customizable Platform to Longitudinally Record Protein-DNA Interactions Over Time in Cells and Tissues.
Allen Yen, Chase Mateusiak, Simona Sarafinovska, Mariam A Gachechiladze, Juanru Guo, Robi D Mitra

Curr Protoc· September 2023

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Epigenetic regulation of hybrid epithelial-mesenchymal cell states in cancer.
Reilly A Sample, Marina F Nogueira, Robi D Mitra, Sidharth V Puram

Oncogene· July 2023

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Zinc cluster transcription factors frequently activate target genes using a non-canonical half-site binding mode.
Pamela S Recio, Nikhil J Mitra, Christian A Shively, David Song, Grace Jaramillo, Robi D Mitra

Nucleic Acids Res· June 2023

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Calling Cards: a customizable platform to longitudinally record protein-DNA interactions over time in cells and tissues.
Allen Yen, Chase Mateusiak, Simona Sarafinovska, Mariam A Gachechiladze, Juanru Guo, Robi D Mitra

bioRxiv· June 2023

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A Suite of New Strain Construction Vectors for Gene Expression Knockdown in Budding Yeast.
Christian A Shively, Fengping Dong, Robi D Mitra

ACS Synth Biol· February 2023

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Pooled image-base screening of mitochondria with microraft isolation distinguishes pathogenic mitofusin 2 mutations.
Alex L Yenkin, John C Bramley, Colin L Kremitzki, Jason E Waligorski, Mariel J Liebeskind, Robi D Mitra

Commun Biol· October 2022

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Measuring transcription factor binding and gene expression using barcoded self-reporting transposon calling cards and transcriptomes.
Matthew Lalli, Allen Yen, Urvashi Thopte, Fengping Dong, Arnav Moudgil, Robi D Mitra

NAR Genom Bioinform· September 2022

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Disentangling glial diversity in peripheral nerves at single-nuclei resolution.
Aldrin K Y Yim, Peter L Wang, John R Bermingham, Amber Hackett, Amy Strickland, Robi D Mitra

Nat Neurosci· February 2022

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From karyotypes to precision genomics in 9p deletion and duplication syndromes.
Eleanor I Sams, Jeffrey K Ng, Victoria Tate, Ying-Chen Claire Hou, Yang Cao, Robi D Mitra

HGG Adv· January 2022

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The qBED track: a novel genome browser visualization for point processes.
Arnav Moudgil, Daofeng Li, Silas Hsu, Deepak Purushotham, Ting Wang, Robi D Mitra

Bioinformatics· May 2021

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High-resolution HLA typing by long reads from the R10.3 Oxford nanopore flow cells.
Chang Liu, Xiao Yang, Brian F Duffy, Jessica Hoisington-Lopez, MariaLynn Crosby, Robi D Mitra

Hum Immunol· April 2021

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Brd4-bound enhancers drive cell-intrinsic sex differences in glioblastoma.
Najla Kfoury, Zongtai Qi, Briana C Prager, Michael N Wilkinson, Lauren Broestl, Robi D Mitra

Proc Natl Acad Sci U S A· April 2021

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Rapid and Extraction-Free Detection of SARS-CoV-2 from Saliva by Colorimetric Reverse-Transcription Loop-Mediated Isothermal Amplification.
Matthew A Lalli, Joshua S Langmade, Xuhua Chen, Catrina C Fronick, Christopher S Sawyer, Robi D Mitra

Clin Chem· January 2021

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High-throughput single-cell functional elucidation of neurodevelopmental disease-associated genes reveals convergent mechanisms altering neuronal differentiation.
Matthew A Lalli, Denis Avey, Joseph D Dougherty, Jeffrey Milbrandt, Robi D Mitra

Genome Res· September 2020

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