Publications by authors named "Robin Gutell"

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In vivo structure probing of RNA in : novel insights into the ribosome structure of .
Allison M Williams, Elizabeth A Jolley, Michel Geovanni Santiago-Martínez, Cheong Xin Chan, Robin R Gutell

RNA· October 2023

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The universally conserved nucleotides of the small subunit ribosomal RNAs.
Harry F Noller, John Paul Donohue, Robin R Gutell

RNA· May 2022

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R2DT is a framework for predicting and visualising RNA secondary structure using templates.
Blake A Sweeney, David Hoksza, Eric P Nawrocki, Carlos Eduardo Ribas, Fábio Madeira, Robin Gutell

Nat Commun· June 2021

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Supersized Ribosomal RNA Expansion Segments in Asgard Archaea.
Petar I Penev, Sara Fakhretaha-Aval, Vaishnavi J Patel, Jamie J Cannone, Robin R Gutell

Genome Biol Evol· October 2020

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RNAcentral: a comprehensive database of non-coding RNA sequences.

Nucleic Acids Res· January 2017

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R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server.
Jamie J Cannone, Blake A Sweeney, Anton I Petrov, Robin R Gutell, Craig L Zirbel

Nucleic Acids Res· July 2015

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Helix capping in RNA structure.
Jung C Lee, Robin R Gutell

PLoS One· June 2015

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rRNA--the evolution of that magic molecule.
Robin R Gutell

RNA· April 2015

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Ten lessons with Carl Woese about RNA and comparative analysis.
Robin R Gutell

RNA Biol· March 2015

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Introduction to special Carl Woese issue in RNA Biology.
Robin R Gutell

RNA Biol· March 2015

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RNAcentral: an international database of ncRNA sequences.

Nucleic Acids Res· January 2015

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Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems.
Lei Shang, David P Gardner, Weijia Xu, Jamie J Cannone, Daniel P Miranker, Robin R Gutell

BMC Syst Biol· November 2014

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The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum.
Jean E Feagin, Maria Isabel Harrell, Jung C Lee, Kevin J Coe, Bryan H Sands, Robin R Gutell

PLoS One· March 2013

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Specificity between lactobacilli and hymenopteran hosts is the exception rather than the rule.
Quinn S McFrederick, Jamie J Cannone, Robin R Gutell, Katrin Kellner, Robert M Plowes

Appl Environ Microbiol· March 2013

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Structural constraints identified with covariation analysis in ribosomal RNA.
Lei Shang, Weijia Xu, Stuart Ozer, Robin R Gutell

PLoS One· December 2012

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An Accurate Scalable Template-based Alignment Algorithm.
David P Gardner, Weijia Xu, Daniel P Miranker, Stuart Ozer, Jamie J Cannone, Robin R Gutell

Proceedings (IEEE Int Conf Bioinformatics Biomed)· December 2012

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A comparison of the crystal structures of eukaryotic and bacterial SSU ribosomal RNAs reveals common structural features in the hypervariable regions.
Jung C Lee, Robin R Gutell

PLoS One· October 2012

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R-PASS: A Fast Structure-based RNA Sequence Alignment Algorithm.
Yanan Jiang, Weijia Xu, Lee Parnell Thompson, Robin R Gutell, Daniel P Miranker

Proceedings (IEEE Int Conf Bioinformatics Biomed)· December 2011

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rCAD: A Novel Database Schema for the Comparative Analysis of RNA.
Stuart Ozer, Kishore J Doshi, Weijia Xu, Robin R Gutell

Proc IEEE Int Conf Escience· December 2011

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Statistical potentials for hairpin and internal loops improve the accuracy of the predicted RNA structure.
David P Gardner, Pengyu Ren, Stuart Ozer, Robin R Gutell

J Mol Biol· October 2011

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Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA.
Chaitanya Muralidhara, Andrew M Gross, Robin R Gutell, Orly Alter

PLoS One· September 2011

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RNA2DMap: A Visual Exploration Tool of the Information in RNA's Higher-Order Structure.
Weijia Xu, Ame Wongsa, Jung Lee, Lei Shang, Jamie J Cannone, Robin R Gutell

Proceedings (IEEE Int Conf Bioinformatics Biomed)· January 2011

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Coarse-grained model for simulation of RNA three-dimensional structures.
Zhen Xia, David Paul Gardner, Robin R Gutell, Pengyu Ren

J Phys Chem B· October 2010

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Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes.
Coren A Milbury, Jung C Lee, Jamie J Cannone, Patrick M Gaffney, Robin R Gutell

BMC Genomics· September 2010

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Placement of attine ant-associated Pseudonocardia in a global Pseudonocardia phylogeny (Pseudonocardiaceae, Actinomycetales): a test of two symbiont-association models.
Ulrich G Mueller, Heather Ishak, Jung C Lee, Ruchira Sen, Robin R Gutell

Antonie Van Leeuwenhoek· August 2010

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