Publications by authors named "Robin Mark Warren"

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cultured in MGIT media for whole-genome sequencing application: a systematic literature review and meta-analysis.
Emilyn Costa Conceição, Felicia Wells, Abhinav Sharma, Mishka Haffejee, Brendon Mann, Robin Mark Warren

Microb Genom· November 2025

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Consolidation of a genomic epidemiological surveillance network for tuberculosis (REVIGET) in northern and northeastern Brazil: a study protocol.
Emilyn Costa Conceição, Karla Valéria Batista Lima, Cristiane Cunha Frota, Theolis Costa Barbosa Bessa, Adriana Ayden Ferreira, Robin Mark Warren

Front Public Health· October 2025

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Population structure and emergence of resistance to new and repurposed drugs in XDR-TB: insights from a 10-year genomic study in the Western Cape, South Africa review.
Justice Tresor Ngom, Johannes Loubser, Elizna Maasdorp, Yonas Ghebrekristos, Sarishna Singh, Robin Mark Warren

Front Cell Infect Microbiol· September 2025

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Amplicon Sequencing using the Long-Read Sequencing Technologies.
Morwasehla Modjadji, Brendon Coenrad Mann, Johannes Loubser, Jennifer Williams, Janré Steyn, Robin Mark Warren

J Vis Exp· August 2025

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Matrix-based DNA Extraction for Targeted Next-Generation Sequencing on Decontaminated Sputum Samples.
Jennifer Williams, Janré Steyn, Emilyn Costa Conceição, Felicia Bernita Wells, Melanie Grobbelaar, Robin Mark Warren

J Vis Exp· June 2025

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Comprehensive genomic surveillance reveals transmission profiles of extensively drug-resistant tuberculosis cases in Pará, Brazil.
Davi Josué Marcon, Abhinav Sharma, Alex Brito Souza, Rafaella Bonfim Barros, Valnete das Graças Dantas Andrade, Robin Mark Warren

Front Microbiol· January 2025

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A Genome-Focused Investigation Reveals the Emergence of a Strain Related to Multidrug-Resistant Tuberculosis in the Amazon Region of Brazil.
Emilyn Costa Conceição, Johannes Loubser, Arthur Emil Dos Santos Guimarães, Abhinav Sharma, Liliana Kokusanilwa Rutaihwa, Robin Mark Warren

Microorganisms· September 2024

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Integrating molecular and radiological screening tools during community-based active case-finding for tuberculosis and COVID-19 in southern Africa.
Alex John Scott, Mohammed Limbada, Tahlia Perumal, Shameem Jaumdally, Andrea Kotze, Robin Mark Warren

Int J Infect Dis· August 2024

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Exploring the potential of Oxford Nanopore Technologies sequencing for Mycobacterium tuberculosis sequencing: An assessment of R10 flowcells and V14 chemistry.
Anzaan Dippenaar, Emilyn Costa Conceição, Felicia Wells, Johannes Loubser, Brendon Mann, Robin Mark Warren

PLoS One· June 2024

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Comparison of two diagnostic intervention packages for community-based active case finding for tuberculosis: an open-label randomized controlled trial.
Aliasgar Esmail, Philippa Randall, Suzette Oelofse, Michele Tomasicchio, Anil Pooran, Robin Mark Warren

Nat Med· April 2023

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New insights on tuberculosis transmission dynamics and drug susceptibility profiles among the prison population in Southern Brazil based on whole-genome sequencing.
Lívia Maria Pala Anselmo, Juliana Failde Gallo, Juliana Maira Watanabe Pinhata, Kamila Chagas Peronni, Wilson Araújo da Silva Junior, Robin Mark Warren

Rev Soc Bras Med Trop· February 2023

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Molecular epidemiology of drug resistant Mycobacterium tuberculosis in Africa: a systematic review.
Namaunga Kasumu Chisompola, Elizabeth Maria Streicher, Chishala Miriam Kapambwe Muchemwa, Robin Mark Warren, Samantha Leigh Sampson

BMC Infect Dis· May 2020

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Phylogenomic assessment of drug-resistant Mycobacterium tuberculosis strains from Beira, Mozambique.
Evangelina Inacio Namburete, Anzaan Dippenaar, Emilyn Costa Conceição, Cinara Feliciano, Margarida Maria Passeri do Nascimento, Robin Mark Warren

Tuberculosis (Edinb)· March 2020

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A landscape of genomic alterations at the root of a near-untreatable tuberculosis epidemic.
Marisa Klopper, Tim Hermanus Heupink, Grant Hill-Cawthorne, Elizabeth Maria Streicher, Anzaan Dippenaar, Robin Mark Warren

BMC Med· February 2020

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Recovery of from positive mycobacterium growth indicator tubes stored at room temperature for up to 6 years in low-income and High-Tuberculosis-Burden Country.
Joconiah Chirenda, Martha Chipinduro, Marianna de Kock, Claudia Spies, C Tanaka Sakubani, Robin Mark Warren

Int J Mycobacteriol· November 2019

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Xpert MTB/RIF performance to diagnose tuberculosis and rifampicin resistance in a reference centre in southern Brazil.
Cinara Silva Feliciano, Lucas José Bazzo Menon, Livia Maria Pala Anselmo, Anzaan Dippenaar, Robin Mark Warren

ERJ Open Res· July 2019

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On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics.
Karla C T Machado, Suereta Fortuin, Gisele Guicardi Tomazella, Andre F Fonseca, Robin Mark Warren

Front Microbiol· June 2019

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Papanicolaou induced fluorescence, Ziehl-Neelsen and Auramine O stains on lymph node fine needle aspiration biopsy specimens from children: A comparative study.
Malesiba Mampotoko Selepe, Abraham Christoffel van Wyk, Kim Gilberte Pauline Hoek, Yvonne Prince, Paul David van Helden, Robin Mark Warren

Diagn Cytopathol· July 2018

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Accuracy of whole genome sequencing versus phenotypic (MGIT) and commercial molecular tests for detection of drug-resistant Mycobacterium tuberculosis isolated from patients in Brazil and Mozambique.
Cinara Silva Feliciano, Evangelina Inacio Namburete, Jéssica Rodrigues Plaça, Kamila Peronni, Anzaan Dippenaar, Robin Mark Warren

Tuberculosis (Edinb)· May 2018

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Genetic diversity and potential routes of transmission of Mycobacterium bovis in Mozambique.
Adelina Machado, Teresa Rito, Solomon Ghebremichael, Nuelma Muhate, Gabriel Maxhuza, Robin Mark Warren

PLoS Negl Trop Dis· January 2018

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Progenitor strain introduction of Mycobacterium bovis at the wildlife-livestock interface can lead to clonal expansion of the disease in a single ecosystem.
Anzaan Dippenaar, Sven David Charles Parsons, Michele Ann Miller, Tiny Hlokwe, Nicolaas Claudius Gey van Pittius, Robin Mark Warren

Infect Genet Evol· July 2017

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The plasmid-mediated evolution of the mycobacterial ESX (Type VII) secretion systems.
Mae Newton-Foot, Robin Mark Warren, Samantha Leigh Sampson, Paul David van Helden, Nicolaas Claudius Gey van Pittius

BMC Evol Biol· March 2016

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Whole genome sequence analysis of Mycobacterium suricattae.
Anzaan Dippenaar, Sven David Charles Parsons, Samantha Leigh Sampson, Ruben Gerhard van der Merwe, Julian Ashley Drewe, Robin Mark Warren

Tuberculosis (Edinb)· December 2015

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Assessing the progress of Mycobacterium tuberculosis H37Rv structural genomics.
Zhuo Fang, Ruben Gerhard van der Merwe, Robin Mark Warren, Wolf-Dieter Schubert, Nicolaas Claudius Gey van Pittius

Tuberculosis (Edinb)· March 2015

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Iron acquisition strategies in mycobacteria.
Zhuo Fang, Samantha Leigh Sampson, Robin Mark Warren, Nicolaas Claudius Gey van Pittius, Mae Newton-Foot

Tuberculosis (Edinb)· March 2015

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