Publications by authors named "Robyn Kaake"

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Integrative multi-omics analysis identifies influenza virus host factors.
Leah P Shriver, Benjamin J Polacco, Manon Eckhardt, Max W Chang, Carles Martínez-Romero, Robyn M Kaake

iScience· November 2025

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Old World alphaviruses use distinct mechanisms to infect brain microvascular endothelial cells for neuroinvasion.
Pablo A Alvarez, Ashley Tang, Declan M Winters, Prashant Kaushal, Angelica Medina, Robyn M Kaake

Cell Rep· October 2025

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Paracrine Signals from HIV-1 Infected Immune Cells Reprogram Cervical Cancer Pathways.
Charles Ochieng' Olwal, Ujjwal Rathore, Sara Makanani, Prashant Kaushal, Immy A Ashley, Robyn M Kaake

bioRxiv· June 2025

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The Chlamydia effector Dre1 binds dynactin to reposition host organelles during infection.
Jessica Sherry, Komal Ishwar Pawar, Lee Dolat, Erin Smith, I-Chang Chang, Robyn Kaake

Cell Rep· April 2025

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Mass Spectrometry-Based Proteomics Technologies to Define Endogenous Protein-Protein Interactions and Their Applications to Cancer and Viral Infectious Diseases.
Clinton Yu, Rithika Adavikolanu, Robyn M Kaake, Lan Huang

Mass Spectrom Rev· February 2025

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Old World alphaviruses use distinct mechanisms to infect brain microvascular endothelial cells for neuroinvasion.
Pablo A Alvarez, Ashley Tang, Declan M Winters, Prashant Kaushal, Angelica Medina, Robyn M Kaake

bioRxiv· January 2025

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Protocol for mapping differential protein-protein interaction networks using affinity purification-mass spectrometry.
Prashant Kaushal, Manisha R Ummadi, Gwendolyn M Jang, Yennifer Delgado, Sara K Makanani, Robyn Kaake

STAR Protoc· December 2024

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Protein Interaction Map of APOBEC3 Enzyme Family Reveals Deamination-Independent Role in Cellular Function.
Gwendolyn M Jang, Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Erika Prando Munhoz, Reanna Lao, Robyn M Kaake

Mol Cell Proteomics· May 2024

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Mapping Differential Protein-Protein Interaction Networks using Affinity Purification Mass Spectrometry.
Prashant Kaushal, Manisha R Ummadi, Gwendolyn M Jang, Yennifer Delgado, Sara K Makanani, Robyn Kaake

ArXiv· May 2024

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CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells.
Ujjwal Rathore, Paige Haas, Vigneshwari Easwar Kumar, Joseph Hiatt, Kelsey M Haas, Robyn M Kaake

mBio· April 2024

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Protein interaction map of APOBEC3 enzyme family reveals deamination-independent role in cellular function.
Gwendolyn M Jang, Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Erika Prando Munhoz, Reanna Lao, Robyn M Kaake

bioRxiv· February 2024

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De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking.
Zhen Chen, Momoko Shiozaki, Kelsey M Haas, Will M Skinner, Shumei Zhao, Robyn M Kaake

Cell· November 2023

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Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets.
Kelsey M Haas, Michael J McGregor, Mehdi Bouhaddou, Benjamin J Polacco, Eun-Young Kim, Robyn M Kaake

Nat Commun· September 2023

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Functional analysis of a common BAG3 allele associated with protection from heart failure.
Juan A Perez-Bermejo, Luke M Judge, Christina L Jensen, Kenneth Wu, Hannah L Watry, Robyn M Kaake

Nat Cardiovasc Res· July 2023

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Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.
Sun Kyung Kim, Miles Sasha Dickinson, Janet Finer-Moore, Ziqiang Guan, Robyn M Kaake

Nat Struct Mol Biol· March 2023

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Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.
Sun Kyung Kim, Miles Sasha Dickinson, Janet Finer-Moore, Ziqiang Guan, Robyn M Kaake

bioRxiv· January 2023

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From systems to structure - using genetic data to model protein structures.
Hannes Braberg, Ignacia Echeverria, Robyn M Kaake, Andrej Sali, Nevan J Krogan

Nat Rev Genet· June 2022

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Characterization of an A3G-Vif-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host-Pathogen Complexes.
Robyn M Kaake, Ignacia Echeverria, Seung Joong Kim, John Von Dollen, Nicholas M Chesarino

Mol Cell Proteomics· March 2022

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Systems-level effects of allosteric perturbations to a model molecular switch.
Tina Perica, Christopher J P Mathy, Jiewei Xu, Gwendolyn Μ Jang, Yang Zhang, Robyn Kaake

Nature· November 2021

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Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry.
Andrew Wheat, Clinton Yu, Xiaorong Wang, Anthony M Burke, Ilan E Chemmama, Robyn M Kaake

Proc Natl Acad Sci U S A· August 2021

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Proteomic Approaches to Study SARS-CoV-2 Biology and COVID-19 Pathology.
Paige Haas, Monita Muralidharan, Nevan J Krogan, Robyn M Kaake, Ruth Hüttenhain

J Proteome Res· February 2021

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Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.
David E Gordon, Joseph Hiatt, Mehdi Bouhaddou, Veronica V Rezelj, Svenja Ulferts, Robyn M Kaake

Science· December 2020

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Structural basis of CD4 downregulation by HIV-1 Nef.
Yonghwa Kwon, Robyn M Kaake, Ignacia Echeverria, Marissa Suarez, Mohammad Karimian Shamsabadi

Nat Struct Mol Biol· September 2020

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The Global Phosphorylation Landscape of SARS-CoV-2 Infection.
Mehdi Bouhaddou, Danish Memon, Bjoern Meyer, Kris M White, Veronica V Rezelj, Robyn M Kaake

Cell· August 2020

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Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection.
Jessica Sook Yuin Ho, Matthew Angel, Yixuan Ma, Elizabeth Sloan, Guojun Wang, Robyn Kaake

Cell· June 2020

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