Publications by authors named "Roderic Guigo"

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Long-read transcriptomics of a diverse human cohort reveals ancestry bias in gene annotation.
Pau Clavell-Revelles, Fairlie Reese, Sílvia Carbonell-Sala, Fabien Degalez, Carme Arnan

Nat Commun· December 2025

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The Biodiversity Cell Atlas: mapping the tree of life at cellular resolution.
Arnau Sebé-Pedrós, Amos Tanay, Mara K N Lawniczak, Detlev Arendt, Stein Aerts

Nature· September 2025

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The genome sequence of the Violet Copper, (Denis & Schiffermüller, 1775).
Clara Pladevall, Roger Caritg, Francisco Cámara, Silvia Carbonell, Jèssica Gómez-Garrido

F1000Res· June 2025

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Studying relative RNA localization from nucleus to the cytosol.
Vasilis F Ntasis, Roderic Guigó

NAR Genom Bioinform· June 2025

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CapTrap-seq: Advancing zebrafish transcriptomic research through high-fidelity full-length RNA sequencing.
Monika Kwiatkowska, Marta Blangiewicz, Tomasz Mądry, Silvia Carbonell-Sala, Roderic Guigó

bioRxiv· May 2025

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Epigenetic regulation of HOXA2 expression affects tumor progression and predicts breast cancer patient survival.
Fatima Domenica Elisa De Palma, Jonathan G Pol, Vincent Carbonnier, Sarah Adriana Scuderi, Deborah Mannino

Cell Death Differ· April 2025

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The Federated European Genome-Phenome Archive as a global network for sharing human genomics data.
Teresa D'Altri, Mallory Ann Freeberg, Amy J Curwin, Ana Alonso, Ana T Freitas, Roderic Guigo

Nat Genet· March 2025

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The BioGenome Portal: a web-based platform for biodiversity genomics data management.
Emilio Righi, Roderic Guigó

NAR Genom Bioinform· March 2025

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Long-read transcriptomics of a diverse human cohort reveals widespread ancestry bias in gene annotation.
Pau Clavell-Revelles, Fairlie Reese, Sílvia Carbonell-Sala, Fabien Degalez, Winona Oliveros

bioRxiv· March 2025

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EPIraction - an atlas of candidate enhancer-gene interactions in human tissues and cell lines.
Ramil N Nurtdinov, Roderic Guigó

bioRxiv· February 2025

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GENCODE 2025: reference gene annotation for human and mouse.
Jonathan M Mudge, Sílvia Carbonell-Sala, Mark Diekhans, Jose Gonzalez Martinez, Toby Hunt

Nucleic Acids Res· January 2025

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An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation.
Jill E Moore, Henry E Pratt, Kaili Fan, Nishigandha Phalke, Jonathan Fisher

bioRxiv· December 2024

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The commitment of the human cell atlas to humanity.
Ido Amit, Kristin Ardlie, Fabiana Arzuaga, Gordon Awandare, Gary Bader, Roderic Guigo

Nat Commun· November 2024

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Data sharing ethics toolkit: The Human Cell Atlas.
Emily Kirby, Alexander Bernier, Roderic Guigó, Barbara Wold, Fabiana Arzuaga

Nat Commun· November 2024

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GENCODE: massively expanding the lncRNA catalog through capture long-read RNA sequencing.
Gazaldeep Kaur, Tamara Perteghella, Sílvia Carbonell-Sala, Jose Gonzalez-Martinez, Toby Hunt

bioRxiv· October 2024

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The Catalan initiative for the Earth BioGenome Project: contributing local data to global biodiversity genomics.
Montserrat Corominas, Tomàs Marquès-Bonet, Miquel A Arnedo, Mònica Bayés, Jordina Belmonte

NAR Genom Bioinform· September 2024

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Long non-coding RNAs involved in development and regeneration.
Carlos Camilleri-Robles, Raziel Amador, Marcel Tiebe, Aurelio A Teleman, Florenci Serras

NAR Genom Bioinform· September 2024

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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
Francisco J Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell-Sala

Nat Methods· July 2024

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CapTrap-seq: a platform-agnostic and quantitative approach for high-fidelity full-length RNA sequencing.
Sílvia Carbonell-Sala, Tamara Perteghella, Julien Lagarde, Hiromi Nishiyori, Emilio Palumbo

Nat Commun· June 2024

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An Insertion Within SIRPβ1 Shows a Dual Effect Over Alzheimer's Disease Cognitive Decline Altering the Microglial Response.
José María García-Alberca, Itziar de Rojas, Elisabeth Sanchez-Mejias, Diego Garrido-Martín, Laura Gonzalez-Palma, Roderic Guigo

J Alzheimers Dis· March 2024

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Studying relative RNA localization From nucleus to the cytosol.
Vasilis F Ntasis, Roderic Guigó

bioRxiv· March 2024

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Integration of transcription regulation and functional genomic data reveals lncRNA SNHG6's role in hematopoietic differentiation and leukemia.
Joshua M Hazan, Raziel Amador, Tahleel Ali-Nasser, Tamar Lahav, Stav Roni Shotan

J Biomed Sci· February 2024

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Molecular signatures of alternative reproductive strategies in a facultatively social hover wasp.
Benjamin A Taylor, Daisy Taylor, Alexandrina Bodrug-Schepers, Francisco Câmara Ferreira, Nancy Stralis-Pavese

Mol Ecol· January 2024

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An encyclopedia of enhancer-gene regulatory interactions in the human genome.
Andreas R Gschwind, Kristy S Mualim, Alireza Karbalayghareh, Maya U Sheth, Kushal K Dey

bioRxiv· November 2023

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A fast non-parametric test of association for multiple traits.
Diego Garrido-Martín, Miquel Calvo, Ferran Reverter, Roderic Guigó

Genome Biol· October 2023

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