Publications by authors named "Roger B Deal"

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Replacement of Arabidopsis H2A.Z with human H2A.Z orthologs reveals extensive functional conservation and limited importance of the N-terminal tail sequence for Arabidopsis development.
Paja Sijacic, Dylan H Holder, Brianna D Silver, Ellen G Krall, Courtney G Willett, Roger B Deal

Genetics· June 2025

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Dynamic Mapping of the Methylproteome Using a Chemoenzymatic Approach.
Jonathan Farhi, Benjamin Emenike, Richard S Lee, Kirti Sad, Dorelle V Fawwal, Roger B Deal

J Am Chem Soc· March 2025

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Replacement of Arabidopsis H2A.Z with human H2A.Z orthologs reveals extensive functional conservation and limited importance of the N-terminal tail sequence for Arabidopsis development.
Paja Sijacic, Dylan H Holder, Ellen G Krall, Courtney G Willett, Maryam Foroozani, Roger B Deal

bioRxiv· July 2024

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Differences in transcription initiation directionality underlie distinctions between plants and animals in chromatin modification patterns at genes and cis-regulatory elements.
Brianna D Silver, Courtney G Willett, Kelsey A Maher, Dongxue Wang, Roger B Deal

G3 (Bethesda)· March 2024

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Differences in transcription initiation directionality underlie distinctions between plants and animals in chromatin modification patterns at genes and cis-regulatory elements.
Brianna D Silver, Courtney G Willett, Kelsey A Maher, Dongxue Wang, Roger B Deal

bioRxiv· November 2023

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Histone Variants in the Specialization of Plant Chromatin.
Maryam Foroozani, Dylan H Holder, Roger B Deal

Annu Rev Plant Biol· May 2022

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Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice.
Mauricio A Reynoso, Alexander T Borowsky, Germain C Pauluzzi, Elaine Yeung, Jianhai Zhang, Roger B Deal

Dev Cell· May 2022

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The VIL gene CRAWLING ELEPHANT controls maturation and differentiation in tomato via polycomb silencing.
Ido Shwartz, Chen Yahav, Neta Kovetz, Matan Levy, Alon Israeli, Roger B Deal

PLoS Genet· March 2022

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Innovation, conservation, and repurposing of gene function in root cell type development.
Kaisa Kajala, Mona Gouran, Lidor Shaar-Moshe, G Alex Mason, Joel Rodriguez-Medina, Roger B Deal

Cell· September 2021

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Innovation, conservation, and repurposing of gene function in root cell type development.
Kaisa Kajala, Mona Gouran, Lidor Shaar-Moshe, G Alex Mason, Joel Rodriguez-Medina, Roger B Deal

Cell· June 2021

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Considerations in the analysis of plant chromatin accessibility data.
Kerry L Bubb, Roger B Deal

Curr Opin Plant Biol· April 2020

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Evolutionary flexibility in flooding response circuitry in angiosperms.
Mauricio A Reynoso, Kaisa Kajala, Marko Bajic, Donnelly A West, Germain Pauluzzi, Roger B Deal

Science· September 2019

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Methyl-CpG-binding domain 9 (MBD9) is required for H2A.Z incorporation into chromatin at a subset of H2A.Z-enriched regions in the Arabidopsis genome.
Paja Sijacic, Dylan H Holder, Marko Bajic, Roger B Deal

PLoS Genet· August 2019

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The histone variant H2A.Z and chromatin remodeler BRAHMA act coordinately and antagonistically to regulate transcription and nucleosome dynamics in Arabidopsis.
E Shannon Torres, Roger B Deal

Plant J· July 2019

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Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.
Marko Bajic, Kelsey A Maher, Roger B Deal

Methods Mol Biol· June 2018

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The Chromatin Remodelers PKL and PIE1 Act in an Epigenetic Pathway That Determines H3K27me3 Homeostasis in Arabidopsis.
Benjamin Carter, Brett Bishop, Kwok Ki Ho, Ru Huang, Wei Jia, Roger B Deal

Plant Cell· June 2018

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Changes in chromatin accessibility between Arabidopsis stem cells and mesophyll cells illuminate cell type-specific transcription factor networks.
Paja Sijacic, Marko Bajic, Elizabeth C McKinney, Richard B Meagher, Roger B Deal

Plant J· April 2018

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Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules.
Kelsey A Maher, Marko Bajic, Kaisa Kajala, Mauricio Reynoso, Germain Pauluzzi, Roger B Deal

Plant Cell· January 2018

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A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate.
Shawn W Foley, Sager J Gosai, Dongxue Wang, Nur Selamoglu, Amelia C Sollitti, Roger B Deal

Dev Cell· April 2017

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On the origin and evolutionary consequences of gene body DNA methylation.
Adam J Bewick, Lexiang Ji, Chad E Niederhuth, Eva-Maria Willing, Brigitte T Hofmeister, Roger B Deal

Proc Natl Acad Sci U S A· August 2016

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Epigenome profiling of specific plant cell types using a streamlined INTACT protocol and ChIP-seq.
Dongxue Wang, Roger B Deal

Methods Mol Biol· November 2015

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Global analysis of the RNA-protein interaction and RNA secondary structure landscapes of the Arabidopsis nucleus.
Sager J Gosai, Shawn W Foley, Dongxue Wang, Ian M Silverman, Nur Selamoglu, Roger B Deal

Mol Cell· January 2015

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Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model.
Mily Ron, Kaisa Kajala, Germain Pauluzzi, Dongxue Wang, Mauricio A Reynoso, Roger B Deal

Plant Physiol· October 2014

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Measuring genome-wide nucleosome turnover using CATCH-IT.
Sheila S Teves, Roger B Deal, Steven Henikoff

Methods Enzymol· December 2012

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Technologies for systems-level analysis of specific cell types in plants.
Dongxue Wang, E Shannon Mills, Roger B Deal

Plant Sci· December 2012

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