Publications by authors named "Roger Bumgarner"

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VRC01 Selects Rare HIV Escape Mutations After Acquisition in Antibody-Mediated Prevention Trials.
Carolyn Williamson, Lyle Curry, Nonhlanhla N Mkhize, Elena E Giorgi, Craig A Magaret, Roger E Bumgarner

bioRxiv· October 2025

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Long-Read Deep Sequencing Reveals High Rates of Multilineage Transmission and Rapid Viral Population Changes in Acute HIV Infection.
James I Mullins, Wenjie Deng, Elena E Giorgi, Craig A Magaret, Morgane Rolland, Roger E Bumgarner

bioRxiv· October 2025

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Influence of the broadly neutralizing antibody VRC01 on HIV breakthrough virus populations in antibody-mediated prevention trials.
Carolyn Williamson, Chivonne Moodley, Craig A Magaret, Elena E Giorgi, Morgane Rolland, Roger E Bumgarner

bioRxiv· July 2025

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Phylobook: a tool for display, clade annotation and extraction of sequences from molecular phylogenies.
Jeffrey C Furlong, Peter D Darley, Wenjie Deng, James I Mullins, Roger E Bumgarner

Biotechniques· July 2024

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Genomic Islands Shape the Genetic Background of Both JP2 and Non-JP2 .
Weerayuth Kittichotirat, Roger E Bumgarner, Casey Chen

Pathogens· September 2022

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What do positive and negative Cutibacterium culture results in periprosthetic shoulder infection mean? A multi-institutional control study.

J Shoulder Elbow Surg· August 2022

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Cutibacterium recovered from deep specimens at the time of revision shoulder arthroplasty samples has increased biofilm-forming capacity and hemolytic activity compared with Cutibacterium skin isolates from normal subjects.
Jason E Hsu, Della Harrison, Kelvin Anderson, Christopher Huang, Anastasia J Whitson, Roger E Bumgarner

J Shoulder Elbow Surg· February 2022

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Bacterial cyclic diguanylate signaling networks sense temperature.
Henrik Almblad, Trevor E Randall, Fanny Liu, Katherine Leblanc, Ryan A Groves, Roger E Bumgarner

Nat Commun· March 2021

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Cutibacterium subtype distribution on the skin of primary and revision shoulder arthroplasty patients.
Jason E Hsu, Frederick A Matsen, Anastasia J Whitson, Roger E Bumgarner

J Shoulder Elbow Surg· October 2020

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Cutibacterium acnes Isolates from Deep Tissue Specimens Retrieved during Revision Shoulder Arthroplasty: Similar Colony Morphology Does Not Indicate Clonality.
Roger E Bumgarner, Della Harrison, Jason E Hsu

J Clin Microbiol· January 2020

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Transcriptomic Analysis of Core and Accessory Genes in Different Growth Conditions.
Natalia O Tjokro, Weerayuth Kittichotirat, Annamari Torittu, Riikka Ihalin, Roger E Bumgarner

Pathogens· December 2019

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Letter to the Editor regarding Qui et al: "Cutibacterium acnes and the shoulder microbiome".
Dustin R Long, Jason E Hsu, Stephen J Salipante, Roger E Bumgarner

J Shoulder Elbow Surg· August 2019

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Temporal genetic association and temporal genetic causality methods for dissecting complex networks.
Luan Lin, Quan Chen, Jeanne P Hirsch, Seungyeul Yoo, Kayee Yeung, Roger E Bumgarner

Nat Commun· September 2018

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Human Serum-Specific Activation of Alternative Sigma Factors, the Stress Responders in Aggregatibacter actinomycetemcomitans.
Gaoyan Tang-Siegel, Roger Bumgarner, Teresa Ruiz, Weerayuth Kittichotirat, Weizhen Chen

PLoS One· August 2017

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Variable Nitrogen Fixation in Wild Populus.
Sharon L Doty, Andrew W Sher, Neil D Fleck, Mahsa Khorasani, Roger E Bumgarner

PLoS One· July 2017

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Draft Genome Sequence of Clinical Isolate 9610.
Sesha Hanson-Drury, Thao T To, Quanhui Liu, Anh T Vo, Michelle Kim, Roger S Bumgarner

Genome Announc· March 2017

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Comparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection.
Shyamala Iyer, Eleanor Casey, Heather Bouzek, Moon Kim, Wenjie Deng, Roger E Bumgarner

PLoS One· June 2016

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Propionibacterium in Shoulder Arthroplasty: What We Think We Know Today.
Jason E Hsu, Roger E Bumgarner, Frederick A Matsen

J Bone Joint Surg Am· April 2016

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Draft Genome Sequence of Low-Passage Clinical Isolate Porphyromonas gingivalis MP4-504.
Thao T To, Quanhui Liu, Michael Watling, Roger E Bumgarner, Richard P Darveau

Genome Announc· April 2016

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Digital detection of endonuclease mediated gene disruption in the HIV provirus.
Ruth Hall Sedlak, Shu Liang, Nixon Niyonzima, Harshana S De Silva Feelixge, Pavitra Roychoudhury, Roger Bumgarner

Sci Rep· February 2016

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Draft Genome Sequence of Actinomyces odontolyticus subsp. actinosynbacter Strain XH001, the Basibiont of an Oral TM7 Epibiont.
Jeffrey S McLean, Quanhui Liu, Batbileg Bor, Joseph K Bedree, Lujia Cen, Roger E Bumgarner

Genome Announc· February 2016

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High-Quality Draft Genome Sequence of Low-pH-Active Veillonella parvula Strain SHI-1, Isolated from Human Saliva within an In Vitro Oral Biofilm Model.
Anna Edlund, Quanhui Liu, Michael Watling, Thao T To, Roger E Bumgarner

Genome Announc· February 2016

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Lack of viral control and development of combination antiretroviral therapy escape mutations in macaques after bone marrow transplantation.
Christopher W Peterson, Kevin G Haworth, Patricia Polacino, Meei-Li Huang, Craig Sykes, Roger Bumgarner

AIDS· August 2015

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Resistance detected by pyrosequencing following zidovudine monotherapy for prevention of HIV-1 mother-to-child-transmission.
Scott C Olson, Nicole Ngo-Giang-Huong, Ingrid Beck, Wenjie Deng, Paula Britto, Roger E Bumgarner

AIDS· July 2015

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Comparative genomic analysis of seven Mycoplasma hyosynoviae strains.
Eric A Bumgardner, Weerayuth Kittichotirat, Roger E Bumgarner, Paulraj K Lawrence

Microbiologyopen· April 2015

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