Publications by authors named "Roger D Kouyos"

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Phylogenetics and molecular evolution to understand and curb the HIV pandemic.
Huldrych F Günthard, Katharina Kusejko, Roger D Kouyos

Nat Rev Microbiol· January 2026

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The relationship of smoking and unhealthy alcohol use to HIV care retention and viral suppression: findings from a multisite cohort study.
Derek D Satre, Varada Sarovar, Tory Levine, Stacey Alexeeff, Alexandra Lea, Roger D Kouyos

AIDS· December 2025

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The effect of long-acting cabotegravir and rilpivirine treatment on drug resistance in South Africa: a modelling study.
Nuri Han, Tom Loosli, Nanina Anderegg, Anthony Hauser, Johannes Josi, Roger D Kouyos

Lancet Glob Health· December 2025

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The genetic architecture of HIV-1 virulence.
François Blanquart, Chris Wymant, Matthew Hall, Robert Power, Tanya Golubchik, Roger D Kouyos

Virus Evol· December 2025

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Drug Resistance in People With Viremia on Dolutegravir-based Antiretroviral Therapy in Sub-Saharan Africa: The DTG RESIST Study.
Tom Loosli, Carolyn Bolton Moore, Lydia Buzaalirwa, Helen Byakwaga, İpek Çelikağ, Roger D Kouyos

Clin Infect Dis· November 2025

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Machine Learning-based Prediction of Active Tuberculosis in People With HIV Using Clinical Data.
Lena Bartl, Marius Zeeb, Marisa Kälin, Tom Loosli, Julia Notter, Roger D Kouyos

Clin Infect Dis· October 2025

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Screening clinical Candida albicans isolates for invasiveness by mimicking the human environment.
Clément Vulin, Julian Sutter, Tiziano A Schweizer, Federica Andreoni, Julian Baer, Roger D Kouyos

Clin Microbiol Infect· October 2025

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Leukocyte count and new-onset diabetes mellitus in people with HIV: A longitudinal study.
Sophia C Meyer, Zoe Klein, Isabella C Schoepf, Christian W Thorball, Marco Labarile, Roger D Kouyos

HIV Med· October 2025

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Inflammation and B cell activation define a plasma proteome signature predicting tuberculosis in people with HIV.
Katharina Kusejko, Mohammad Arefian, Diane Duroux, Marius Zeeb, Cédric Dollé, Roger D Kouyos

mBio· October 2025

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Safety of Bacillus Calmette-Guérin Vaccination and Impact on HIV-1 Latent Reservoir Size in People With Treated HIV-1 Infection.
Emily West, Sandra E Chaudron, Doris Russenberger, Christina Grube, Karin J Metzner, Roger D Kouyos

Open Forum Infect Dis· October 2025

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Approaches to the Management of Virologic Failure on Dolutegravir-Based Antiretroviral Therapy in the 50 Countries with the Highest Adult HIV Prevalence.
Cameron T Nutt, Richard J Lessells, Winnie R Muyindike, Lyra S Johnson, Roger D Kouyos

Clin Infect Dis· August 2025

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Infection with Mycobacterium tuberculosis alters the antibody response to HIV-1.
Marius Zeeb, Katharina Kusejko, Sonja Hartnack, Chloé Pasin, Irene A Abela, Roger D Kouyos

PLoS Pathog· August 2025

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HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data.
Tanya Golubchik, Lucie Abeler-Dörner, Matthew Hall, Chris Wymant, David Bonsall, Roger D Kouyos

BMC Bioinformatics· August 2025

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Untargeted Metabolite Profile Associations with Body Mass Index, Waist-Hip Ratio, and Antiretroviral Therapy in >1300 People with HIV: the Swiss HIV Cohort Study.
Marco Labarile, Isabella C Schoepf, Chloé Pasin, Mariam Ait Oumelloul, Christian W Thorball, Roger D Kouyos

J Infect Dis· August 2025

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Threshold sensitivity analysis for HIV-1 transmission cluster detection using different genomic regions and subtypes.
Billal M Obeng, Roger D Kouyos, Katharina Kusejko, Luisa Salazar-Vizcaya, Huldrych F Günthard

Virology· July 2025

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Decline of antimicrobial resistance in Pseudomonas aeruginosa bacteraemia following the COVID-19 pandemic: a longitudinal observational study.
Yulia Butscheid, Pascal M Frey, Marc Pfister, Lisa Pagani, Roger D Kouyos

J Antimicrob Chemother· July 2025

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Type I interferon autoantibody footprints reveal neutralizing mechanisms and allow inhibitory decoy design.
Kevin Groen, Roger Kuratli, Jannik Enkelmann, Sonja Fernbach, Pedro D Wendel-Garcia, Roger D Kouyos

J Exp Med· June 2025

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Polygenic Risk Scores for Type 2 Diabetes in the Swiss HIV Cohort Study.
Marco Labarile, Christian W Thorball, Flavia Hodel, Jacques Fellay, Burcu Tepekule, Roger D Kouyos

J Acquir Immune Defic Syndr· June 2025

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Machine Learning Identifies Sexual Behavior Subgroups Among Men Who Have Sex with Men in Switzerland.
Luisa Salazar-Vizcaya, Dunja Nicca, Vanessa Christinet, Roger D Kouyos, Florian Vock

Arch Sex Behav· June 2025

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Low agreement and frequent invalid controls in two SARS-CoV-2 T-cell assays in people with compromised immune function.
Annette Audigé, Alain Amstutz, Macé M Schuurmans, Patrizia Amico, Dominique L Braun, Roger D Kouyos

PLoS One· May 2025

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Predicted dolutegravir resistance in people living with HIV in South Africa during 2020-35: a modelling study.
Tom Loosli, Nuri Han, Anthony Hauser, Johannes Josi, Suzanne M Ingle, Roger D Kouyos

Lancet Glob Health· April 2025

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Addressing data management and analysis challenges in viral genomics: The Swiss HIV cohort study viral next generation sequencing database.
Marius Zeeb, Paul Frischknecht, Suraj Balakrishna, Lisa Jörimann, Jasmin Tschumi, Roger D Kouyos

PLOS Digit Health· April 2025

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Rare twin cysteine residues in the HIV-1 envelope variable region 1 link to neutralization escape and breadth development.
Maria C Hesselman, Marius Zeeb, Peter Rusert, Chloé Pasin, Jennifer Mamrosh, Roger D Kouyos

Cell Host Microbe· February 2025

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Computational and in vitro evaluation of probiotic treatments for nasal decolonization.
Burcu Tepekule, Weronika Barcik, Willy I Staiger, Judith Bergadà-Pijuan, Thomas Scheier, Roger D Kouyos

Proc Natl Acad Sci U S A· February 2025

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Comparative Evaluation of Open-Source Bioinformatics Pipelines for Full-Length Viral Genome Assembly.
Levente Zsichla, Marius Zeeb, Dávid Fazekas, Éva Áy, Dalma Müller, Roger D Kouyos

Viruses· November 2024

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