Publications by authors named "Rohit Roy"

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Revealing hidden protonated conformational states in RNA dynamic ensembles.
Ainan Geng, Rohit Roy, Laura Ganser, Linshu Li, Hashim M Al-Hashimi

Nucleic Acids Res· November 2025

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Insight into the Conformational Ensembles Formed by U-U and T-T Mismatches in RNA and DNA Duplexes From a Structure-based Survey, NMR, and Molecular Dynamics Simulations.
Ainan Geng, Rohit Roy, Stephanie Gu, Serafima Guseva, Supriya Pratihar

J Mol Biol· September 2025

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Kinetic Dissection of Proton-Coupled Conformational Transitions in Nucleic Acids by Integrating pH-Dependent NMR and Chemical Modifications.
Yeongjoon Lee, Rohit Roy, Stephanie Gu, Subin B Shetty, Atul K Rangadurai

J Am Chem Soc· June 2025

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Conformational penalties: New insights into nucleic acid recognition.
Ainan Geng, Rohit Roy, Hashim M Al-Hashimi

Curr Opin Struct Biol· December 2024

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Exploring the energetic and conformational properties of the sequence space connecting naturally occurring RNA tetraloop receptor motifs.
John H Shin, Lena M Cuevas, Rohit Roy, Steve L Bonilla, Hashim Al-Hashimi

RNA· November 2024

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AlphaFold3 takes a step toward decoding molecular behavior and biological computation.
Rohit Roy, Hashim M Al-Hashimi

Nat Struct Mol Biol· July 2024

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An RNA excited conformational state at atomic resolution.
Ainan Geng, Laura Ganser, Rohit Roy, Honglue Shi, Supriya Pratihar

Nat Commun· December 2023

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Kinetic Resolution of the Atomic 3D Structures Formed by Ground and Excited Conformational States in an RNA Dynamic Ensemble.
Rohit Roy, Ainan Geng, Honglue Shi, Dawn K Merriman, Elizabeth A Dethoff

J Am Chem Soc· October 2023

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Author Correction: RNA conformational propensities determine cellular activity.
Megan L Ken, Rohit Roy, Ainan Geng, Laura R Ganser, Akanksha Manghrani

Nature· June 2023

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RNA conformational propensities determine cellular activity.
Megan L Ken, Rohit Roy, Ainan Geng, Laura R Ganser, Akanksha Manghrani

Nature· May 2023

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Path Planning and Motion Control of Indoor Mobile Robot under Exploration-Based SLAM (e-SLAM).
Rohit Roy, You-Peng Tu, Long-Jye Sheu, Wei-Hua Chieng, Li-Chuan Tang

Sensors (Basel)· March 2023

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Exploration-Based SLAM (e-SLAM) for the Indoor Mobile Robot Using Lidar.
Hasan Ismail, Rohit Roy, Long-Jye Sheu, Wei-Hua Chieng, Li-Chuan Tang

Sensors (Basel)· February 2022

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Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction.
Honglue Shi, Atul Rangadurai, Hala Abou Assi, Rohit Roy, David A Case

Nat Commun· November 2020

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Evidence for Hidden Involvement of N3-Protonated Guanine in RNA Structure and Function.
Antarip Halder, Saurabh Vemuri, Rohit Roy, Jayanth Katuri, Dhananjay Bhattacharyya

ACS Omega· January 2019

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Consequences of Mg binding on the geometry and stability of RNA base pairs.
Antarip Halder, Rohit Roy, Dhananjay Bhattacharyya, Abhijit Mitra

Phys Chem Chem Phys· August 2018

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How Does Mg Modulate the RNA Folding Mechanism: A Case Study of the G:C W:W Trans Basepair.
Antarip Halder, Rohit Roy, Dhananjay Bhattacharyya, Abhijit Mitra

Biophys J· July 2017

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