Publications by authors named "Romain Blanc-Mathieu"

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JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models.
Damla Ovek Baydar, Ieva Rauluseviciute, Dina R Aronsen, Romain Blanc-Mathieu, Ine Bonthuis

Nucleic Acids Res· December 2025

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Haptophyte-infecting viruses change the genome condensing proteins of dinoflagellates.
Haina Wang, Lingjie Meng, Sara Otaegi-Ugartemendia, Gabriela Nérida Condezo, Romain Blanc-Mathieu

Commun Biol· March 2025

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SEPALLATA-driven MADS transcription factor tetramerization is required for inner whorl floral organ development.
Veronique Hugouvieux, Romain Blanc-Mathieu, Aline Janeau, Michel Paul, Jeremy Lucas

Plant Cell· September 2024

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Plant-TFClass: a structural classification for plant transcription factors.
Romain Blanc-Mathieu, Renaud Dumas, Laura Turchi, Jérémy Lucas, François Parcy

Trends Plant Sci· January 2024

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JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.
Ieva Rauluseviciute, Rafael Riudavets-Puig, Romain Blanc-Mathieu, Jaime A Castro-Mondragon, Katalin Ferenc

Nucleic Acids Res· January 2024

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Identification of Plant Transcription Factor DNA-Binding Sites Using seq-DAP-seq.
Stephanie Hutin, Romain Blanc-Mathieu, Philippe Rieu, François Parcy, Xuelei Lai

Methods Mol Biol· September 2023

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Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs.
Hiroki Ban, Shinya Sato, Shinya Yoshikawa, Kazumasa Yamada, Yoji Nakamura, Romain Blanc-Mathieu

Commun Biol· July 2023

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Single-cytosine methylation at W-boxes repels binding of WRKY transcription factors through steric hindrance.
Magali Charvin, Thierry Halter, Romain Blanc-Mathieu, Pierre Barraud, Magali Aumont-Nicaise

Plant Physiol· May 2023

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The F-box protein UFO controls flower development by redirecting the master transcription factor LEAFY to new cis-elements.
Philippe Rieu, Laura Turchi, Emmanuel Thévenon, Eleftherios Zarkadas, Max Nanao, Romain Blanc-Mathieu

Nat Plants· February 2023

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Functional Differentiation among the Arabidopsis Phosphatidylinositol 4-Phosphate 5-Kinase Genes PIP5K1, PIP5K2 and PIP5K3.
Machiko Watari, Mariko Kato, Romain Blanc-Mathieu, Tomohiko Tsuge, Hiroyuki Ogata

Plant Cell Physiol· May 2022

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Adaptive evolution of viruses infecting marine microalgae (haptophytes), from acute infections to stable coexistence.
Ruth-Anne Sandaa, Marius R Saltvedt, Håkon Dahle, Haina Wang, Selina Våge, Romain Blanc-Mathieu

Biol Rev Camb Philos Soc· February 2022

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JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.
Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu

Nucleic Acids Res· January 2022

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Year-round dynamics of amplicon sequence variant communities differ among eukaryotes, Imitervirales and prokaryotes in a coastal ecosystem.
Florian Prodinger, Hisashi Endo, Yoshihito Takano, Yanze Li, Kento Tominaga, Romain Blanc-Mathieu

FEMS Microbiol Ecol· January 2022

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The intervening domain is required for DNA-binding and functional identity of plant MADS transcription factors.
Xuelei Lai, Rosario Vega-Léon, Veronique Hugouvieux, Romain Blanc-Mathieu, Froukje van der Wal

Nat Commun· August 2021

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The LEAFY floral regulator displays pioneer transcription factor properties.
Xuelei Lai, Romain Blanc-Mathieu, Loïc GrandVuillemin, Ying Huang, Arnaud Stigliani

Mol Plant· May 2021

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Quantitative Assessment of Nucleocytoplasmic Large DNA Virus and Host Interactions Predicted by Co-occurrence Analyses.
Lingjie Meng, Hisashi Endo, Romain Blanc-Mathieu, Samuel Chaffron, Rodrigo Hernández-Velázquez

mSphere· April 2021

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A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism.
Romain Blanc-Mathieu, Håkon Dahle, Antje Hofgaard, David Brandt, Hiroki Ban

J Virol· March 2021

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Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean.
Hiroto Kaneko, Romain Blanc-Mathieu, Hisashi Endo, Samuel Chaffron, Tom O Delmont

iScience· January 2021

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Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions.
Hisashi Endo, Romain Blanc-Mathieu, Yanze Li, Guillem Salazar, Nicolas Henry

Nat Ecol Evol· December 2020

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Ecological Structuring of Temperate Bacteriophages in the Inflammatory Bowel Disease-Affected Gut.
Hiroki Nishiyama, Hisashi Endo, Romain Blanc-Mathieu, Hiroyuki Ogata

Microorganisms· October 2020

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KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.
Takuya Aramaki, Romain Blanc-Mathieu, Hisashi Endo, Koichi Ohkubo, Minoru Kanehisa

Bioinformatics· April 2020

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An Optimized Metabarcoding Method for .
Florian Prodinger, Hisashi Endo, Yasuhiro Gotoh, Yanze Li, Daichi Morimoto, Romain Blanc-Mathieu

Microorganisms· April 2020

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The Earth Is Small for "Leviathans": Long Distance Dispersal of Giant Viruses across Aquatic Environments.
Yanze Li, Hisashi Endo, Yasuhiro Gotoh, Hiroyasu Watai, Nana Ogawa, Romain Blanc-Mathieu

Microbes Environ· September 2019

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Medusavirus, a Novel Large DNA Virus Discovered from Hot Spring Water.
Genki Yoshikawa, Romain Blanc-Mathieu, Chihong Song, Yoko Kayama, Tomohiro Mochizuki

J Virol· April 2019

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Xanthomonas citri jumbo phage XacN1 exhibits a wide host range and high complement of tRNA genes.
Genki Yoshikawa, Ahmed Askora, Romain Blanc-Mathieu, Takeru Kawasaki, Yanze Li

Sci Rep· March 2018

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