Publications by authors named "Roman Stocsits"

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Cohesin supercoils DNA during loop extrusion.
Iain F Davidson, Roman Barth, Kota Nagasaka, Wen Tang, Gordana Wutz, Roman R Stocsits

Cell Rep· June 2025

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Cohesin positions the epigenetic reader Phf2 within the genome.
Wen Tang, Lorenzo Costantino, Roman Stocsits, Gordana Wutz, Rene Ladurner

EMBO J· February 2025

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Cohesin and CTCF do not assemble TADs in sperm and male pronuclei.
Gregor Jessberger, Csilla Várnai, Roman R Stocsits, Wen Tang, Georg Stary

Genome Res· December 2023

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Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms.
Kota Nagasaka, Iain F Davidson, Roman R Stocsits, Wen Tang, Gordana Wutz

Mol Cell· September 2023

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HiCognition: a visual exploration and hypothesis testing tool for 3D genomics.
Christoph C H Langer, Michael Mitter, Roman R Stocsits, Daniel W Gerlich

Genome Biol· July 2023

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Transcription shapes 3D chromatin organization by interacting with loop extrusion.
Edward J Banigan, Wen Tang, Aafke A van den Berg, Roman R Stocsits, Gordana Wutz

Proc Natl Acad Sci U S A· March 2023

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Nucleome programming is required for the foundation of totipotency in mammalian germline development.
Masahiro Nagano, Bo Hu, Shihori Yokobayashi, Akitoshi Yamamura, Fumiya Umemura, Roman Stocsits

EMBO J· July 2022

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MCM complexes are barriers that restrict cohesin-mediated loop extrusion.
Bart J H Dequeker, Matthias J Scherr, Hugo B Brandão, Johanna Gassler, Sean Powell, Roman Stocsits

Nature· June 2022

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Cohesin-Dependent and -Independent Mechanisms Mediate Chromosomal Contacts between Promoters and Enhancers.
Michiel J Thiecke, Gordana Wutz, Matthias Muhar, Wen Tang, Stephen Bevan, Roman Stocsits

Cell Rep· July 2020

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Wapl releases Scc1-cohesin and regulates chromosome structure and segregation in mouse oocytes.
Mariana C C Silva, Sean Powell, Sabrina Ladstätter, Johanna Gassler, Roman Stocsits

J Cell Biol· April 2020

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ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesin from WAPL.
Gordana Wutz, Rene Ladurner, Brian Glenn St Hilaire, Roman R Stocsits, Kota Nagasaka

Elife· February 2020

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Absolute quantification of cohesin, CTCF and their regulators in human cells.
Johann Holzmann, Antonio Z Politi, Kota Nagasaka, Merle Hantsche-Grininger, Nike Walther, Roman R Stocsits

Elife· June 2019

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Dynamics of sister chromatid resolution during cell cycle progression.
Rugile Stanyte, Johannes Nuebler, Claudia Blaukopf, Rudolf Hoefler, Roman Stocsits

J Cell Biol· June 2018

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Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Gordana Wutz, Csilla Várnai, Kota Nagasaka, David A Cisneros, Roman R Stocsits

EMBO J· December 2017

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Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl.
Georg A Busslinger, Roman R Stocsits, Petra van der Lelij, Elin Axelsson, Antonio Tedeschi

Nature· April 2017

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H3S28 phosphorylation is a hallmark of the transcriptional response to cellular stress.
Anna Sawicka, Dominik Hartl, Malgorzata Goiser, Oliver Pusch, Roman R Stocsits

Genome Res· November 2014

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SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs.
Petra van der Lelij, Roman R Stocsits, Rene Ladurner, Georg Petzold, Emanuel Kreidl

EMBO J· November 2014

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Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing.
Paulina A Latos, Florian M Pauler, Martha V Koerner, H Başak Şenergin, Quanah J Hudson, Roman R Stocsits

Science· December 2012

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The impact of rRNA secondary structure consideration in alignment and tree reconstruction: simulated data and a case study on the phylogeny of hexapods.
Harald O Letsch, Patrick Kück, Roman R Stocsits, Bernhard Misof

Mol Biol Evol· November 2010

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Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation.
Harald O Letsch, Carola Greve, Patrick Kück, Günther Fleck, Roman R Stocsits

Mol Phylogenet Evol· December 2009

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Accurate and efficient reconstruction of deep phylogenies from structured RNAs.
Roman R Stocsits, Harald Letsch, Jana Hertel, Bernhard Misof, Peter F Stadler

Nucleic Acids Res· October 2009

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Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships.
Björn M von Reumont, Karen Meusemann, Nikolaus U Szucsich, Emiliano Dell'Ampio, Vivek Gowri-Shankar, Roman R Stocsits

BMC Evol Biol· May 2009

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Multiple sequence alignments of partially coding nucleic acid sequences.
Roman R Stocsits, Ivo L Hofacker, Claudia Fried, Peter F Stadler

BMC Bioinformatics· June 2005

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