Publications by authors named "Roman Zenka"

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Tumor ploidy determination in low-pass whole genome sequencing and allelic copy number visualization using the Constellation Plot.
Sarah H Johnson, James B Smadbeck, Roman M Zenka, Michael T Barrett, Athanasios Gaitatzes

Genome Biol· May 2025

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An integrative multi-omics analysis reveals a multi-analyte signature of pancreatic ductal adenocarcinoma in serum.
Rex Devasahayam Arokia Balaya, Partho Sen, Caroline W Grant, Roman Zenka, Marimuthu Sappani

J Gastroenterol· April 2025

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Development of a Multiplexed Sphingolipids Method for Diagnosis of Inborn Errors of Ceramide Metabolism.
Seul Kee Byeon, Jinyong Kim, Peter Jared Wegwerth, Roman Zenka, John P George

Clin Chem· November 2024

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PP2A catalytic subunit alpha is critically required for CD8 T-cell homeostasis and antibacterial responses.
Xian Zhou, Meilu Li, Minji Ai, Yanfeng Li, Xingxing Zhu, Roman Zenka

Eur J Immunol· October 2024

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Comparison of cat stone matrix and cat urine proteomes to human calcium oxalate stone matrix and urine proteomes.
Jeffrey A Wesson, Roman Zenka, Katherine Sherman, Jessica Eisenhauer, Jody Lulich

Urolithiasis· September 2024

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Diversity of post-translational modifications and cell signaling revealed by single cell and single organelle mass spectrometry.
Dong-Gi Mun, Firdous A Bhat, Neha Joshi, Leticia Sandoval, Husheng Ding, Roman M Zenka

Commun Biol· July 2024

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Exploration of Nitrotyrosine-Containing Proteins and Peptides by Antibody-Based Enrichment Strategies.
Firdous A Bhat, Kiran K Mangalaparthi, Husheng Ding, Anu Jain, Joel-Sean Hsu, Roman M Zenka

Mol Cell Proteomics· March 2024

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PP2A catalytic subunit alpha is critically required for CD8 T cell homeostasis and anti-bacterial responses.
Xian Zhou, Meilu Li, Minji Ai, Yanfeng Li, Xingxing Zhu, Roman Zenka

bioRxiv· February 2024

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sBioSITe enables sensitive identification of the cell surface proteome through direct enrichment of biotinylated peptides.
Kishore Garapati, Husheng Ding, M Cristine Charlesworth, Yohan Kim, Roman Zenka

Clin Proteomics· December 2023

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Four-dimensional proteomics analysis of human cerebrospinal fluid with trapped ion mobility spectrometry using PASEF.
Dong-Gi Mun, Rohit Budhraja, Firdous A Bhat, Roman M Zenka, Kenneth L Johnson

Proteomics· May 2023

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Comparison of cat and human calcium oxalate monohydrate kidney stone matrix proteomes.
Jeffrey A Wesson, Roman Zenka, Jody Lulich, Jessica Eisenhauer, Carley Davis

Urolithiasis· December 2022

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TRIT1 defect leads to a recognizable phenotype of myoclonic epilepsy, speech delay, strabismus, progressive spasticity, and normal lactate levels.
Ewout Muylle, Huafang Jiang, Christin Johnsen, Seul Kee Byeon, Wasantha Ranatunga, Roman M Zenka

J Inherit Metab Dis· November 2022

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Development of a multiomics model for identification of predictive biomarkers for COVID-19 severity: a retrospective cohort study.
Seul Kee Byeon, Anil K Madugundu, Kishore Garapati, Madan Gopal Ramarajan, Mayank Saraswat, Roman M Zenka

Lancet Digit Health· September 2022

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PT: Protein Panoramic annoTation Tool for the interpretation of protein coding genetic variants.
Elias DeVoe, Gavin R Oliver, Roman Zenka, Patrick R Blackburn, Margot A Cousin

JAMIA Open· July 2021

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Serum Proteomics on the Basis of Discovery of Predictive Biomarkers of Response to Androgen Deprivation Therapy in Advanced Prostate Cancer.
Manish Kohli, Ann L Oberg, Douglas W Mahoney, Shaun M Riska, Robert Sherwood, Roman M Zenka

Clin Genitourin Cancer· August 2019

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Mate pair sequencing improves detection of genomic abnormalities in acute myeloid leukemia.
Umut Aypar, Stephanie A Smoley, Beth A Pitel, Kathryn E Pearce, Roman M Zenka

Eur J Haematol· January 2019

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Copy number variant analysis using genome-wide mate-pair sequencing.
James B Smadbeck, Sarah H Johnson, Stephanie A Smoley, Athanasios Gaitatzes, Travis M Drucker, Roman M Zenka

Genes Chromosomes Cancer· September 2018

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SVAtools for junction detection of genome-wide chromosomal rearrangements by mate-pair sequencing (MPseq).
Sarah H Johnson, James B Smadbeck, Stephanie A Smoley, Athanasios Gaitatzes, Stephen J Murphy, Roman M Zenka

Cancer Genet· February 2018

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Clarifying immunoglobulin gene usage in systemic and localized immunoglobulin light-chain amyloidosis by mass spectrometry.
Taxiarchis V Kourelis, Surendra Dasari, Jason D Theis, Marina Ramirez-Alvarado, Paul J Kurtin, Roman M Zenka

Blood· January 2017

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Identification of Biomarkers for PKD1 Using Urinary Exosomes.
Marie C Hogan, Jason L Bakeberg, Vladimir G Gainullin, Maria V Irazabal, Amber J Harmon, Roman M Zenka

J Am Soc Nephrol· July 2015

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Proteomic detection of immunoglobulin light chain variable region peptides from amyloidosis patient biopsies.
Surendra Dasari, Jason D Theis, Julie A Vrana, Oana M Meureta, Patrick S Quint, Roman M Zenka

J Proteome Res· April 2015

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Subfractionation, characterization, and in-depth proteomic analysis of glomerular membrane vesicles in human urine.
Marie C Hogan, Kenneth L Johnson, Roman M Zenka, M Cristine Charlesworth, Benjamin J Madden

Kidney Int· May 2014

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Clinical proteome informatics workbench detects pathogenic mutations in hereditary amyloidoses.
Surendra Dasari, Jason D Theis, Julie A Vrana, Roman M Zenka, Michael T Zimmermann

J Proteome Res· May 2014

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Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides.
Douglas W Mahoney, Terry M Therneau, Carrie J Heppelmann, Leeann Higgins, Linda M Benson, Roman M Zenka

J Proteome Res· September 2011

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Bi-Linear Regression for O Quantification: Modeling across the Elution Profile.
Jeanette E Eckel-Passow, Douglas W Mahoney, Ann L Oberg, Roman M Zenka, Kenneth L Johnson

J Proteomics Bioinform· December 2010

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