Publications by authors named "Ronald Beavis"

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Discovering and linking public omics data sets using the Omics Discovery Index.
Yasset Perez-Riverol, Mingze Bai, Felipe da Veiga Leprevost, Silvano Squizzato, Young Mi Park, Ronald C Beavis

Nat Biotechnol· May 2017

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Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications.
Gilbert S Omenn, Lydie Lane, Emma K Lundberg, Ronald C Beavis, Christopher M Overall

J Proteome Res· November 2016

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g2pDB: A Database Mapping Protein Post-Translational Modifications to Genomic Coordinates.
Sarah Keegan, John P Cortens, Ronald C Beavis, David Fenyö

J Proteome Res· March 2016

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3D HPLC-MS with Reversed-Phase Separation Functionality in All Three Dimensions for Large-Scale Bottom-Up Proteomics and Peptide Retention Data Collection.
Vic Spicer, Peyman Ezzati, Haley Neustaeter, Ronald C Beavis, John A Wilkins

Anal Chem· March 2016

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Systems Proteomics View of the Endogenous Human Claudin Protein Family.
Fei Liu, Michael Koval, Shoba Ranganathan, Susan Fanayan, William S Hancock, Ronald C Beavis

J Proteome Res· February 2016

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Selenocysteine: Wherefore Art Thou?
David Fenyö, Ronald C Beavis

J Proteome Res· February 2016

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Toward an Upgraded Honey Bee (Apis mellifera L.) Genome Annotation Using Proteogenomics.
Alison McAfee, Brock A Harpur, Sarah Michaud, Ronald C Beavis, Clement F Kent

J Proteome Res· February 2016

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Integrated Proteomic and Genomic Analysis of Gastric Cancer Patient Tissues.
Julia Fangfei Yan, Hoguen Kim, Seul-Ki Jeong, Hyoung-Joo Lee, Manveen K Sethi, Ronald C Beavis

J Proteome Res· December 2015

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Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification.
Gilbert S Omenn, Lydie Lane, Emma K Lundberg, Ronald C Beavis, Alexey I Nesvizhskii

J Proteome Res· September 2015

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The GPMDB REST interface.
David Fenyö, Ronald C Beavis

Bioinformatics· June 2015

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Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins.
Lydie Lane, Amos Bairoch, Ronald C Beavis, Eric W Deutsch, Pascale Gaudet

J Proteome Res· January 2014

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Genome wide proteomics of ERBB2 and EGFR and other oncogenic pathways in inflammatory breast cancer.
Emma Yue Zhang, Massimo Cristofanilli, Fredika Robertson, James M Reuben, Zhaomei Mu, Ronald C Beavis

J Proteome Res· June 2013

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A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17.
Suli Liu, Hogune Im, Amos Bairoch, Massimo Cristofanilli, Rui Chen, Ronald C Beavis

J Proteome Res· January 2013

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In silico protein interaction analysis using the global proteome machine database.
Cheng-Cheng Zhang, Jason C Rogalski, Daniel M Evans, Cordula Klockenbusch, Ronald C Beavis

J Proteome Res· February 2011

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Mass spectrometric protein identification using the global proteome machine.
David Fenyö, Jan Eriksson, Ronald Beavis

Methods Mol Biol· December 2010

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Proteome-wide prediction of acetylation substrates.
Amrita Basu, Kristie L Rose, Junmei Zhang, Ronald C Beavis, Beatrix Ueberheide

Proc Natl Acad Sci U S A· August 2009

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Implementation of a data repository-driven approach for targeted proteomics experiments by multiple reaction monitoring.
Geraldine M Walsh, Shujun Lin, Daniel M Evans, Arash Khosrovi-Eghbal, Ronald C Beavis

J Proteomics· July 2009

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Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles.
Henry Rodriguez, Mike Snyder, Mathias Uhlén, Phil Andrews, Ronald Beavis

J Proteome Res· July 2009

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Guidelines for reporting the use of mass spectrometry informatics in proteomics.
Pierre-Alain Binz, Robert Barkovich, Ronald C Beavis, David Creasy, David M Horn

Nat Biotechnol· August 2008

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Informatics development: challenges and solutions for MALDI mass spectrometry.
David Fenyö, Ronald C Beavis

Mass Spectrom Rev· February 2008

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Determining the overall merit of protein identification data sets: rho-diagrams and rho-scores.
David Fenyo, Brett S Phinney, Ronald C Beavis

J Proteome Res· May 2007

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Proteomics of specific treatment-related alterations in Fabry disease: a strategy to identify biological abnormalities.
David F Moore, Oleg V Krokhin, Ronald C Beavis, Markus Ries, Chevalia Robinson

Proc Natl Acad Sci U S A· February 2007

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General framework for developing and evaluating database scoring algorithms using the TANDEM search engine.
Brendan MacLean, Jimmy K Eng, Ronald C Beavis, Martin McIntosh

Bioinformatics· November 2006

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Use of peptide retention time prediction for protein identification by off-line reversed-phase HPLC-MALDI MS/MS.
Oleg V Krokhin, Stephen Ying, John P Cortens, Dhiman Ghosh, Victor Spicer, Ronald C Beavis

Anal Chem· September 2006

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Finding protein sequences using PROWL.
Ronald Beavis, David Fenyö

Curr Protoc Bioinformatics· October 2004

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