Publications by authors named "Ruchi Newman"

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A VRC13-like bNAb response is associated with complex escape pathways in HIV-1 envelope.
Vinita R Joshi, Daniel T Claiborne, Melissa L Pack, Karen A Power, Ruchi M Newman

J Virol· March 2024

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Functional impairment of HIV-specific CD8 T cells precedes aborted spontaneous control of viremia.
David R Collins, Jonathan M Urbach, Zachary J Racenet, Umar Arshad, Karen A Power, Ruchi M Newman

Immunity· October 2021

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Gp41-targeted antibodies restore infectivity of a fusion-deficient HIV-1 envelope glycoprotein.
Vinita R Joshi, Ruchi M Newman, Melissa L Pack, Karen A Power, James B Munro

PLoS Pathog· May 2020

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Structural topology defines protective CD8 T cell epitopes in the HIV proteome.
Gaurav D Gaiha, Elizabeth J Rossin, Jonathan Urbach, Christian Landeros, David R Collins, Ruchi M Newman

Science· May 2019

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High-Resolution Sequencing of Viral Populations during Early Simian Immunodeficiency Virus Infection Reveals Evolutionary Strategies for Rapid Escape from Emerging Env-Specific Antibody Responses.
Sergio Ita, Alison K Hill, Evan C Lam, Fay J Dufort, Xiao Yang, Ruchi Newman

J Virol· April 2018

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Dengue Virus Evades AAV-Mediated Neutralizing Antibody Prophylaxis in Rhesus Monkeys.
Diogo M Magnani, Michael J Ricciardi, Varian K Bailey, Martin J Gutman, Núria Pedreño-Lopez, Ruchi M Newman

Mol Ther· October 2017

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Protective Efficacy of Broadly Neutralizing Antibodies with Incomplete Neutralization Activity against Simian-Human Immunodeficiency Virus in Rhesus Monkeys.
Boris Julg, Devin Sok, Stephen D Schmidt, Peter Abbink, Ruchi M Newman

J Virol· October 2017

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Deep sequencing of RSV from an adult challenge study and from naturally infected infants reveals heterogeneous diversification dynamics.
Jessica W Lau, Young-In Kim, Ryan Murphy, Ruchi Newman, Xiao Yang

Virology· October 2017

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Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment.
Francesca Di Giallonardo, Jemma L Geoghegan, Douglas E Docherty, Robert G McLean, Michael C Zody, Ruchi M Newman

J Virol· January 2016

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History and genomic sequence analysis of the herpes simplex virus 1 KOS and KOS1.1 sub-strains.
Robert C Colgrove, Xueqiao Liu, Anthony Griffiths, Priya Raja, Neal A Deluca, Ruchi M Newman

Virology· January 2016

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Genotype-specific variation in West Nile virus dispersal in California.
Nisha K Duggal, William K Reisen, Ying Fang, Ruchi M Newman, Xiao Yang

Virology· November 2015

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Global Diversity within and between Human Herpesvirus 1 and 2 Glycoproteins.
Susanna L Lamers, Ruchi M Newman, Oliver Laeyendecker, Aaron A R Tobian, Robert C Colgrove

J Virol· August 2015

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Genome Sequencing and Analysis of Geographically Diverse Clinical Isolates of Herpes Simplex Virus 2.
Ruchi M Newman, Susanna L Lamers, Brian Weiner, Stuart C Ray, Robert C Colgrove

J Virol· August 2015

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Standardized metadata for human pathogen/vector genomic sequences.
Vivien G Dugan, Scott J Emrich, Gloria I Giraldo-Calderón, Omar S Harb, Ruchi M Newman

PLoS One· February 2015

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Within-host whole-genome deep sequencing and diversity analysis of human respiratory syncytial virus infection reveals dynamics of genomic diversity in the absence and presence of immune pressure.
Yonatan H Grad, Ruchi Newman, Michael Zody, Xiao Yang, Ryan Murphy

J Virol· July 2014

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Genomic sequences of a low passage herpes simplex virus 2 clinical isolate and its plaque-purified derivative strain.
Robert Colgrove, Fernando Diaz, Ruchi Newman, Sakina Saif, Terry Shea

Virology· February 2014

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Whole genome pyrosequencing of rare hepatitis C virus genotypes enhances subtype classification and identification of naturally occurring drug resistance variants.
Ruchi M Newman, Thomas Kuntzen, Brian Weiner, Andrew Berical, Patrick Charlebois

J Infect Dis· July 2013

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Gain-of-sensitivity mutations in a Trim5-resistant primary isolate of pathogenic SIV identify two independent conserved determinants of Trim5α specificity.
Kevin R McCarthy, Aaron G Schmidt, Andrea Kirmaier, Allison L Wyand, Ruchi M Newman

PLoS Pathog· May 2013

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Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection.
Matthew R Henn, Christian L Boutwell, Patrick Charlebois, Niall J Lennon, Karen A Power, Ruchi Newman

PLoS Pathog· July 2012

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Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data.
Alexander R Macalalad, Michael C Zody, Patrick Charlebois, Niall J Lennon, Ruchi M Newman

PLoS Comput Biol· June 2012

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Internally deleted WNV genomes isolated from exotic birds in New Mexico: function in cells, mosquitoes, and mice.
Kendra N Pesko, Kelly A Fitzpatrick, Elizabeth M Ryan, Pei-Yong Shi, Bo Zhang, Ruchi M Newman

Virology· May 2012

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Molecular evolution of West Nile virus in a northern temperate region: Connecticut, USA 1999-2008.
Philip M Armstrong, Charles R Vossbrinck, Theodore G Andreadis, John F Anderson, Kendra N Pesko, Ruchi M Newman

Virology· August 2011

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TRIM5 suppresses cross-species transmission of a primate immunodeficiency virus and selects for emergence of resistant variants in the new species.
Andrea Kirmaier, Fan Wu, Ruchi M Newman, Laura R Hall, Jennifer S Morgan

PLoS Biol· August 2010

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Rhesus macaque TRIM5 alleles have divergent antiretroviral specificities.
Sam J Wilson, Benjamin L J Webb, Charlotte Maplanka, Ruchi M Newman, Ernst J Verschoor

J Virol· July 2008

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Evolution of a TRIM5-CypA splice isoform in old world monkeys.
Ruchi M Newman, Laura Hall, Andrea Kirmaier, Lu-Ann Pozzi, Erez Pery

PLoS Pathog· February 2008

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