Publications by authors named "Rudiger Brauning"

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SimGBS: a rapid method for simulating large-scale genotyping-by-sequencing data.
Jie Kang, Melanie K Hess, Ken G Dodds, Rudiger Brauning, John C McEwan

BMC Bioinformatics· December 2025

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Genome-Wide Association Studies in Japanese Quails of the F Resource Population Elucidate Molecular Markers and Candidate Genes for Body Weight Parameters.
Natalia A Volkova, Michael N Romanov, Nadezhda Yu German, Polina V Larionova, Anastasia N Vetokh, Rudiger Brauning

Int J Mol Sci· August 2025

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Assessing population allele frequency differences using low-depth sequencing data.
Ken G Dodds, John C McEwan, Rudiger Brauning, Shannon M Clarke

J R Soc N Z· May 2025

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Aotearoa genomic data repository: An āhuru mōwai for taonga species sequencing data.
Ben Te Aika, Libby Liggins, Claire Rye, E Owen Perkins, Jun Huh, Rudiger Brauning

Mol Ecol Resour· February 2025

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Genome-Wide Association Study Revealed Putative SNPs and Candidate Genes Associated with Growth and Meat Traits in Japanese Quail.
Natalia A Volkova, Michael N Romanov, Alexandra S Abdelmanova, Polina V Larionova, Nadezhda Yu German, Rudiger Brauning

Genes (Basel)· February 2024

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Genotyping-by-Sequencing Strategy for Integrating Genomic Structure, Diversity and Performance of Various Japanese Quail () Breeds.
Natalia A Volkova, Michael N Romanov, Alexandra S Abdelmanova, Polina V Larionova, Nadezhda Yu German, Rudiger Brauning

Animals (Basel)· November 2023

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Large-scale analysis of sheep rumen metagenome profiles captured by reduced representation sequencing reveals individual profiles are influenced by the environment and genetics of the host.
Melanie K Hess, Hannah E Hodgkinson, Andrew S Hess, Larissa Zetouni, Juliana C C Budel, Rudiger Brauning

BMC Genomics· September 2023

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Traces of Human-Mediated Selection in the Gene Pool of Red Deer Populations.
Nina Moravčíková, Radovan Kasarda, Radoslav Židek, John Colin McEwan, Rudiger Brauning

Animals (Basel)· August 2023

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Genome wide association study for growth in Pakistani dromedary camels using genotyping-by-sequencing.
Sajida Sabahat, Asif Nadeem, Rudiger Brauning, Peter C Thomson, Mehar S Khatkar

Anim Biosci· July 2023

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Combining host and rumen metagenome profiling for selection in sheep: prediction of methane, feed efficiency, production, and health traits.
Melanie K Hess, Larissa Zetouni, Andrew S Hess, Juliana Budel, Ken G Dodds, Rudiger Brauning

Genet Sel Evol· July 2023

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Efficiency of genotyping by sequencing in inferring genomic relatedness and molecular insights into fat tail selection in Tunisian sheep.
Sonia Bedhiaf-Romdhani, Imen Baazaoui, Ken G Dodds, Rudiger Brauning, Rayna M Anderson

Anim Genet· June 2023

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Hitchhiking Mapping of Candidate Regions Associated with Fat Deposition in Iranian Thin and Fat Tail Sheep Breeds Suggests New Insights into Molecular Aspects of Fat Tail Selection.
Mohammad Hossein Moradi, Ardeshir Nejati-Javaremi, Mohammad Moradi-Shahrbabak, Ken G Dodds, Rudiger Brauning

Animals (Basel)· May 2022

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A Multi-Omic Huntington's Disease Transgenic Sheep-Model Database for Investigating Disease Pathogenesis.
Emily R Mears, Renee R Handley, Matthew J Grant, Suzanne J Reid, Benjamin T Day, Rudiger Brauning

J Huntingtons Dis· January 2022

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Beyond the genome: a perspective on the use of DNA methylation profiles as a tool for the livestock industry.
Shannon Clarke, Alex Caulton, Kathryn McRae, Rudiger Brauning, Christine Couldrey

Anim Front· December 2021

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Genomic signatures of inbreeding in a critically endangered parrot, the kākāpō.
Yasmin Foster, Ludovic Dutoit, Stefanie Grosser, Nicolas Dussex, Brodie J Foster, Rudiger Brauning

G3 (Bethesda)· October 2021

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Genomic Tools for the Identification of Loci Associated with Facial Eczema in New Zealand Sheep.
Kathryn M McRae, Suzanne J Rowe, Patricia L Johnson, Hayley J Baird, Neil G Cullen, Rudiger Brauning

Genes (Basel)· September 2021

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A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling.
Melanie K Hess, Suzanne J Rowe, Tracey C Van Stijn, Hannah M Henry, Sharon M Hickey, Rudiger Brauning

PLoS One· July 2020

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Application of Low Coverage Genotyping by Sequencing in Selectively Bred Arctic Charr ().
Christos Palaiokostas, Shannon M Clarke, Henrik Jeuthe, Rudiger Brauning, Timothy P Bilton

G3 (Bethesda)· June 2020

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GBS Data Identify Pigmentation-Specific Genes of Potential Role in Skin-Photosensitization in Two Tunisian Sheep Breeds.
Imen Baazaoui, John McEwan, Rayna Anderson, Rudiger Brauning, Alan McCulloch

Animals (Basel)· December 2019

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Exclusion and Genomic Relatedness Methods for Assignment of Parentage Using Genotyping-by-Sequencing Data.
Ken G Dodds, John C McEwan, Rudiger Brauning, Tracey C van Stijn, Suzanne J Rowe

G3 (Bethesda)· October 2019

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Complete Genome Sequence of the Telford Type S Strain of Mycobacterium avium subsp. paratuberculosis.
Rudiger Brauning, Karren Plain, Milan Gautam, Tonia Russell, C Carolina Correa

Microbiol Resour Announc· March 2019

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Population Connectivity and Traces of Mitochondrial Introgression in New Zealand Black-Billed Gulls ().
Claudia Mischler, Andrew Veale, Tracey van Stijn, Rudiger Brauning, John C McEwan

Genes (Basel)· November 2018

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Whole Genome Sequencing for Determining the Source of Infections in Livestock Herds and Wildlife in New Zealand.
Marian Price-Carter, Rudiger Brauning, Geoffrey W de Lisle, Paul Livingstone, Mark Neill

Front Vet Sci· October 2018

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Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data.
Timothy P Bilton, John C McEwan, Shannon M Clarke, Rudiger Brauning, Tracey C van Stijn

Genetics· June 2018

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An entropy-reducing data representation approach for bioinformatic data.
Alan F McCulloch, Ruy Jauregui, Paul H Maclean, Rachael L Ashby, Roger A Moraga, Rudiger Brauning

Database (Oxford)· January 2018

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