Publications by authors named "Rudolf Meier"

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UITOTO: a software for generating molecular diagnoses for species descriptions.
Ambrosio Torres, Leshon Lee, Amrita Srivathsan, Rudolf Meier

Cladistics· December 2025

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Unknown Germany - An integrative biodiversity discovery program.
Ricarda Lehmitz, Karin Hohberg, Martin Husemann, Ralph S Peters, Nicole Scheunemann, Rudolf Meier

NPJ Biodivers· November 2025

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EntoSieve: Automated Size-Sorting of Insect Bulk Samples to Aid Accurate Megabarcoding and Metabarcoding.
Aleida Ascenzi, Lorenz Wührl, Vivian Feng, Nathalie Klug, Christian Pylatiuk, Rudolf Meier

Mol Ecol Resour· August 2025

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"Dark taxonomy": A new protocol for overcoming the taxonomic impediments for dark taxa and broadening the taxon base for biodiversity assessment.
Rudolf Meier, Amrita Srivathsan, Sarah Siqueira Oliveira, Maria Isabel P A Balbi, Yuchen Ang

Cladistics· April 2025

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Illuminating Entomological Dark Matter with DNA Barcodes in an Era of Insect Decline, Deep Learning, and Genomics.
Rudolf Meier, Mara K N Lawniczak, Amrita Srivathsan

Annu Rev Entomol· January 2025

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Implementing high-throughput insect barcoding in microbiome studies: impact of non-destructive DNA extraction on microbiome reconstruction.
Veronika Andriienko, Mateusz Buczek, Rudolf Meier, Amrita Srivathsan, Piotr Łukasik

PeerJ· September 2024

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Resolving biology's dark matter: species richness, spatiotemporal distribution, and community composition of a dark taxon.
Emily Hartop, Leshon Lee, Amrita Srivathsan, Mirkka Jones, Pablo Peña-Aguilera, Rudolf Meier

BMC Biol· September 2024

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Towards global insect biomonitoring with frugal methods.
Mikkel Brydegaard, Ronniel D Pedales, Vivian Feng, Assoumou Saint-Doria Yamoa, Benoit Kouakou, Rudolf Meier

Philos Trans R Soc Lond B Biol Sci· June 2024

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Towards holistic insect monitoring: species discovery, description, identification and traits for all insects.
Rudolf Meier, Emily Hartop, Christian Pylatiuk, Amrita Srivathsan

Philos Trans R Soc Lond B Biol Sci· June 2024

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ONTbarcoder 2.0: rapid species discovery and identification with real-time barcoding facilitated by Oxford Nanopore R10.4.
Amrita Srivathsan, Vivian Feng, Daniel Suárez, Brent Emerson, Rudolf Meier

Cladistics· April 2024

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Express barcoding with NextGenPCR and MinION for species-level sorting of ecological samples.
Cristina Vasilita, Vivian Feng, Aslak Kappel Hansen, Emily Hartop, Amrita Srivathsan, Rudolf Meier

Mol Ecol Resour· April 2024

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Scalable, Cost-Effective, and Decentralized DNA Barcoding with Oxford Nanopore Sequencing.
Amrita Srivathsan, Rudolf Meier

Methods Mol Biol· April 2024

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Implementing high-throughput insect barcoding in microbiome studies: impact of non-destructive DNA extraction on microbiome reconstruction.
Veronika Andriienko, Mateusz Buczek, Rudolf Meier, Amrita Srivathsan, Piotr Łukasik

bioRxiv· April 2024

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Multispecies environmental DNA metabarcoding sheds light on annual coral spawning events.
Yin Cheong Aden Ip, Jia Jin Marc Chang, Karenne Phyu Phyu Tun, Rudolf Meier, Danwei Huang

Mol Ecol· December 2023

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Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands.
Brent C Emerson, Paulo A V Borges, Pedro Cardoso, Peter Convey, Jeremy R deWaard, Rudolf Meier

Mol Ecol· December 2023

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Network analysis with either Illumina or MinION reveals that detecting vertebrate species requires metabarcoding of iDNA from a diverse fly community.
Amrita Srivathsan, Rebecca Ker Loh, Elliott James Ong, Leshon Lee, Yuchen Ang, Rudolf Meier

Mol Ecol· December 2023

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Two centuries of biodiversity discovery and loss in Singapore.
Ryan A Chisholm, Nadiah P Kristensen, Frank E Rheindt, Kwek Yan Chong, John S Ascher, Rudolf Meier

Proc Natl Acad Sci U S A· December 2023

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Global determinants of insect mitochondrial genetic diversity.
Connor M French, Laura D Bertola, Ana C Carnaval, Evan P Economo, Jamie M Kass, Rudolf Meier

Nat Commun· August 2023

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Future of DNA-based insect monitoring.
Physilia Y S Chua, Sarah J Bourlat, Cameron Ferguson, Petra Korlevic, Leia Zhao, Rudolf Meier

Trends Genet· July 2023

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Convergence of dominance and neglect in flying insect diversity.
Amrita Srivathsan, Yuchen Ang, John M Heraty, Wei Song Hwang, Wan F A Jusoh, Rudolf Meier

Nat Ecol Evol· July 2023

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Size rather than complexity of sexual ornaments prolongs male metamorphosis and explains sexual size dimorphism in sepsid flies.
Gowri Rajaratnam, Gerald Lui, Kathy F Y Su, Martin S J Chew, Yuchen Ang, Rudolf Meier

Proc Biol Sci· May 2023

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Towards Large-Scale Integrative Taxonomy (LIT): Resolving the Data Conundrum for Dark Taxa.
Emily Hartop, Amrita Srivathsan, Fredrik Ronquist, Rudolf Meier

Syst Biol· October 2022

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Phylogenetic resolution of the fly superfamily Ephydroidea-Molecular systematics of the enigmatic and diverse relatives of Drosophilidae.
Isaac S Winkler, Ashley H Kirk-Spriggs, Keith M Bayless, John Soghigian, Rudolf Meier

PLoS One· October 2022

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DiversityScanner: Robotic handling of small invertebrates with machine learning methods.
Lorenz Wührl, Christian Pylatiuk, Matthias Giersch, Florian Lapp, Thomas von Rintelen, Rudolf Meier

Mol Ecol Resour· May 2022

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Monophyletic blowflies revealed by phylogenomics.
Liping Yan, Thomas Pape, Karen Meusemann, Sujatha Narayanan Kutty, Rudolf Meier

BMC Biol· October 2021

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