Publications by authors named "Rui Fa"

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Prediction of prolonged length of stay from first 2 days of hospitalization data: a SHAP value-based variable selection method for a simplified model.
Rui Fa, Daniel Stoessel, Svetlana Artemova, Ursula von Schenck, Hadiseh Nowparast Rostami

Int J Qual Health Care· October 2025

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Early prediction of in-hospital mortality utilizing multivariate predictive modelling of electronic medical records and socio-determinants of health of the first day of hospitalization.
Daniel Stoessel, Rui Fa, Svetlana Artemova, Ursula von Schenck, Hadiseh Nowparast Rostami

BMC Med Inform Decis Mak· November 2023

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Cohort profile for development of machine learning models to predict healthcare-related adverse events (Demeter): clinical objectives, data requirements for modelling and overview of data set for 2016-2018.
Svetlana Artemova, Ursula von Schenck, Rui Fa, Daniel Stoessel, Hadiseh Nowparast Rostami

BMJ Open· August 2023

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Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networks.
Cen Wan, Domenico Cozzetto, Rui Fa, David T Jones

PLoS One· February 2020

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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Naihui Zhou, Yuxiang Jiang, Timothy R Bergquist, Alexandra J Lee, Balint Z Kacsoh, Ahmet S Rifaioglu, Fabio Fabris, Rui Fa, Hai Fang, Stefano Toppo, Marco Falda, Stefano Pascarelli, Stefano Di Carlo, Farrokh Mehryary

Genome Biol· November 2019

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Predicting human protein function with multi-task deep neural networks.
Rui Fa, Domenico Cozzetto, Cen Wan, David T Jones

PLoS One· December 2018

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Distinct gene expression program dynamics during erythropoiesis from human induced pluripotent stem cells compared with adult and cord blood progenitors.
Alison T Merryweather-Clarke, Alex J Tipping, Abigail A Lamikanra, Rui Fa, Basel Abu-Jamous

BMC Genomics· October 2016

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Noise Resistant Generalized Parametric Validity Index of Clustering for Gene Expression Data.
Rui Fa, Asoke K Nandi

IEEE/ACM Trans Comput Biol Bioinform· March 2016

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UNCLES: method for the identification of genes differentially consistently co-expressed in a specific subset of datasets.
Basel Abu-Jamous, Rui Fa, David J Roberts, Asoke K Nandi

BMC Bioinformatics· June 2015

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Musashi-1 maintains blood-testis barrier structure during spermatogenesis and regulates stress granule formation upon heat stress.
Sun ErLin, Wei WenJie, Wang LiNing, Lu BingXin, Lei MingDe, Han RuiFa

Mol Biol Cell· May 2015

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Theoretical and experimental research on the self-assembled system of molecularly imprinted polymers formed by salbutamol and methacrylic acid.
Liu Jun-Bo, Shi Yang, Tang Shan-Shan, Jin Rui-Fa

J Sep Sci· March 2015

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SMART: unique splitting-while-merging framework for gene clustering.
Rui Fa, David J Roberts, Asoke K Nandi

PLoS One· January 2015

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Comprehensive analysis of forty yeast microarray datasets reveals a novel subset of genes (APha-RiB) consistently negatively associated with ribosome biogenesis.
Basel Abu-Jamous, Rui Fa, David J Roberts, Asoke K Nandi

BMC Bioinformatics· September 2014

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Paradigm of tunable clustering using Binarization of Consensus Partition Matrices (Bi-CoPaM) for gene discovery.
Basel Abu-Jamous, Rui Fa, David J Roberts, Asoke K Nandi

PLoS One· July 2013

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Yeast gene CMR1/YDL156W is consistently co-expressed with genes participating in DNA-metabolic processes in a variety of stringent clustering experiments.
Basel Abu-Jamous, Rui Fa, David J Roberts, Asoke K Nandi

J R Soc Interface· April 2013

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Prognostic significance of Aurora-A expression in human bladder cancer.
Yu Lei, Sun Yan, Lei Ming-De, Li Na, Han Rui-Fa

Acta Histochem· September 2011

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