Publications by authors named "Ruibin Xi"

Claim this Profile
C
Correction: Multi-model analysis of gallbladder cancer reveals the role of OxLDL-absorbing neutrophils in promoting liver invasion.
Dongning Rao, Jiaxin Li, Mao Zhang, Siyuan Huang, Lu Meng, Xiaoming Zhang, Ruibin Xi

Exp Hematol Oncol· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
High-resolution detection of copy number alterations in single cells with HiScanner.
Yifan Zhao, Lovelace J Luquette, Alexander D Veit, Xiaochen Wang, Ruibin Xi

Nat Commun· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
High-resolution detection of copy number alterations in single cells with HiScanner.
Yifan Zhao, Lovelace J Luquette, Alexander D Veit, Xiaochen Wang, Ruibin Xi

bioRxiv· April 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Protocol for directly selecting cell type marker genes for single-cell clustering analyses by Festem.
Zihao Chen, Changhu Wang, Ruibin Xi

STAR Protoc· March 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Erratum: CCL15 recruits suppressive monocytes to facilitate immune escape and disease progression in hepatocellular carcinoma.
Long-Zi Liu, Zhao Zhang, Bo-Hao Zheng, Yang Shi, Men Duan, Xiao-Ming Zhang, Ruibin Xi, Xiao-Ying Wang

Hepatology· March 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
B
Benchmarking algorithms for spatially variable gene identification in spatial transcriptomics.
Xuanwei Chen, Qinghua Ran, Junjie Tang, Zihao Chen, Siyuan Huang, Xingjie Shi, Ruibin Xi

Bioinformatics· March 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Detecting copy-number alterations from single-cell chromatin sequencing data by AtaCNA.
Xiaochen Wang, Zijie Jin, Yang Shi, Ruibin Xi

Cell Rep Methods· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Evolutionary dependency of cancer mutations in gene pairs inferred by nonsynonymous-synonymous mutation ratios.
Dong-Jin Han, Sunmin Kim, Seo-Young Lee, Youngbeen Moon, Su Jung Kang, Ruibin Xi

Genome Med· August 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Directly selecting cell-type marker genes for single-cell clustering analyses.
Zihao Chen, Changhu Wang, Siyuan Huang, Yang Shi, Ruibin Xi

Cell Rep Methods· July 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Patient-derived tumor-like cell clusters for personalized chemo- and immunotherapies in non-small cell lung cancer.
Shenyi Yin, Ying Yu, Nan Wu, Minglei Zhuo, Yanmin Wang, Xinghua Cheng, Jiaxin Li, Xiaoyu Zhai, Ruibin Xi, Jianzhong Jeff Xi

Cell Stem Cell· May 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Identification of eight genes associated with recurrent patellar dislocation.
Zijie Xu, Siyuan Huang, Yifan Song, Chao Xu, Hongyu Yan, Ruibin Xi

iScience· May 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Multi-model analysis of gallbladder cancer reveals the role of OxLDL-absorbing neutrophils in promoting liver invasion.
Dongning Rao, Jiaxin Li, Mao Zhang, Siyuan Huang, Lu Meng, Xiaoming Zhang, Ruibin Xi

Exp Hematol Oncol· May 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
De novo identification of expressed cancer somatic mutations from single-cell RNA sequencing data.
Tianyun Zhang, Hanying Jia, Tairan Song, Lin Lv, Doga C Gulhan, Ruibin Xi

Genome Med· December 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
TAGET: a toolkit for analyzing full-length transcripts from long-read sequencing.
Yuchao Xia, Zijie Jin, Chengsheng Zhang, Linkun Ouyang, Yuhao Dong, Ruibin Xi

Nat Commun· September 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Comprehensive analysis of neoantigens derived from structural variation across whole genomes from 2528 tumors.
Yang Shi, Biyang Jing, Ruibin Xi

Genome Biol· July 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.
Isidro Cortés-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang

Nat Genet· June 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The dynamic cellular landscape of grafts with acute rejection after heart transplantation.
Deqiang Kong, Siyuan Huang, Xiaolong Miao, Jiaxin Li, Zelai Wu, Xing Yu, Mengyao Xie, Ruibin Xi

J Heart Lung Transplant· February 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer.
Lina Sieverling, Chen Hong, Sandra D Koser, Philip Ginsbach, Kortine Kleinheinz, Ruibin Xi

Nat Commun· December 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The shaping of cancer genomes with the regional impact of mutation processes.
Soo-Youn Lee, Han Wang, Hae Jin Cho, Ruibin Xi, Tae-Min Kim

Exp Mol Med· July 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Publisher Correction: Single-cell transcriptomic analysis suggests two molecularly distinct subtypes of intrahepatic cholangiocarcinoma.
Guohe Song, Yang Shi, Lu Meng, Jiaqiang Ma, Siyuan Huang, Jiaxin Li, Shuaixi Yang, Xiaoliang Wang, Xiaoying Wang, Xiaoming Zhang, Ruibin Xi

Nat Commun· May 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Author Correction: Whole-genome sequencing of 508 patients identifies key molecular features associated with poor prognosis in esophageal squamous cell carcinoma.
Yongping Cui, Hongyan Chen, Ruibin Xi, Heyang Cui, Yahui Zhao, Xiaomei Lu, Xiaolin Zhu, Yanfeng Xi, Xiao Yu, Caixia Cheng, Xiaolong Cheng

Cell Res· April 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Single-cell transcriptomic analysis suggests two molecularly subtypes of intrahepatic cholangiocarcinoma.
Guohe Song, Yang Shi, Lu Meng, Jiaqiang Ma, Siyuan Huang, Jiaxin Li, Shuaixi Yang, Xiaoliang Wang, Xiaoying Wang, Xiaoming Zhang, Ruibin Xi

Nat Commun· March 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Single-cell gene fusion detection by scFusion.
Zijie Jin, Wenjian Huang, Ning Shen, Juan Li, Xiaochen Wang, Ruibin Xi

Nat Commun· February 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Spatiotemporal Immune Landscape of Colorectal Cancer Liver Metastasis at Single-Cell Level.
Yingcheng Wu, Shuaixi Yang, Jiaqiang Ma, Zechuan Chen, Guohe Song, Jinxia Liu, Xiaowu Huang, Xiaoying Wang, Ruibin Xi, Xiaoming Zhang

Cancer Discov· January 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Genomics landscape of 185 Streptococcus thermophilus and identification of fermentation biomarkers.
Jie Zhao, Linjie Wu, Weicheng Li, Yu Wang, Huijuan Zheng, Ruibin Xi

Food Res Int· December 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis