Publications by authors named "Runpu Chen"

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A comprehensive benchmark study of methods for identifying significantly perturbed subnetworks in cancer.
Le Yang, Runpu Chen, Steve Goodison, Yijun Sun

Brief Bioinform· November 2024

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Prostate Cancer Progression Modeling Provides Insight into Dynamic Molecular Changes Associated with Progressive Disease States.
Runpu Chen, Li Tang, Thomas Melendy, Le Yang, Steve Goodison

Cancer Res Commun· October 2024

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Identifying Significantly Perturbed Subnetworks in Cancer Using Multiple Protein-Protein Interaction Networks.
Le Yang, Runpu Chen, Thomas Melendy, Steve Goodison, Yijun Sun

Cancers (Basel)· August 2023

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KREH1 RNA helicase activity promotes utilization of initiator gRNAs across multiple mRNAs in trypanosome RNA editing.
Ashutosh P Dubey, Brianna L Tylec, Amartya Mishra, Katherine Sortino, Runpu Chen

Nucleic Acids Res· June 2023

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Association of SNPs in the PAI1 Gene with Disease Recurrence and Clinical Outcome in Bladder Cancer.
Kaoru Murakami, Hideki Furuya, Kanani Hokutan, Steve Goodison, Ian Pagano, Runpu Chen, Cheng-Huang Shen

Int J Mol Sci· March 2023

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Comparison of induction chemotherapy combined with concurrent chemoradiotherapy versus concurrent chemoradiotherapy alone in Lymph-Node-Stage III nasopharyngeal carcinoma based on propensity score-matching.
Zhi-Cheng Liu, Ke-Hao Zeng, Zhen-Bang Gu, Run-Pu Chen, Yi-Jing Luo

Radiother Oncol· January 2023

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Conserved and transcript-specific functions of the RESC factors, RESC13 and RESC14, in kinetoplastid RNA editing.
Katherine Sortino, Brianna L Tylec, Runpu Chen, Yijun Sun, Laurie K Read

RNA· November 2022

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PAI-1 is a potential transcriptional silencer that supports bladder cancer cell activity.
Hideki Furuya, Yuka Sasaki, Runpu Chen, Rafael Peres, Kanani Hokutan

Sci Rep· July 2022

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A Diagnostic Gene Expression Signature for Bladder Cancer Can Stratify Cases into Prescribed Molecular Subtypes and Predict Outcome.
Runpu Chen, Ian Pagano, Yijun Sun, Kaoru Murakami, Steve Goodison

Diagnostics (Basel)· July 2022

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Application of a multiplex urinalysis test for the prediction of intravesical BCG treatment response: A pilot study.
Kaoru Murakami, Ashish M Kamat, Yunfeng Dai, Ian Pagano, Runpu Chen

Cancer Biomark· April 2022

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Influencing Factors on the Oncuria™ Urinalysis Assay: An Experimental Model.
Kaoru Murakami, Ian Pagano, Runpu Chen, Yijun Sun, Steve Goodison

Diagnostics (Basel)· June 2021

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Diagnostic performance of Oncuria™, a urinalysis test for bladder cancer.
Yosuke Hirasawa, Ian Pagano, Runpu Chen, Yijun Sun, Yunfeng Dai

J Transl Med· April 2021

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An efficient and effective method to identify significantly perturbed subnetworks in cancer.
Le Yang, Runpu Chen, Steve Goodison, Yijun Sun

Nat Comput Sci· January 2021

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Developmental regulation of edited CYb and COIII mitochondrial mRNAs is achieved by distinct mechanisms in Trypanosoma brucei.
Joseph T Smith, Eva Doleželová, Brianna Tylec, Jonathan E Bard, Runpu Chen

Nucleic Acids Res· September 2020

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Deep-learning approach to identifying cancer subtypes using high-dimensional genomic data.
Runpu Chen, Le Yang, Steve Goodison, Yijun Sun

Bioinformatics· March 2020

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Plasminogen activator inhibitor-2 (PAI-2) overexpression supports bladder cancer development in PAI-1 knockout mice in N-butyl-N- (4-hydroxybutyl)-nitrosamine- induced bladder cancer mouse model.
Hideki Furuya, Kazukuni Hayashi, Yoshiko Shimizu, Nari Kim, Yutaro Tsukikawa, Runpu Chen

J Transl Med· February 2020

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Molecular Profiles of Matched Primary and Metastatic Tumor Samples Support a Linear Evolutionary Model of Breast Cancer.
Runpu Chen, Steve Goodison, Yijun Sun

Cancer Res· January 2020

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MRB10130 is a RESC assembly factor that promotes kinetoplastid RNA editing initiation and progression.
Natalie M McAdams, Gregory L Harrison, Brianna L Tylec, Michelle L Ammerman, Runpu Chen

RNA· September 2019

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Intrinsic and regulated properties of minimally edited trypanosome mRNAs.
Brianna L Tylec, Rachel M Simpson, Laura E Kirby, Runpu Chen, Yijun Sun

Nucleic Acids Res· April 2019

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MRB7260 is essential for productive protein-RNA interactions within the RNA editing substrate binding complex during trypanosome RNA editing.
Natalie M McAdams, Rachel M Simpson, Runpu Chen, Yijun Sun, Laurie K Read

RNA· April 2018

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Sphingosine Kinase 1 expression in peritoneal macrophages is required for colon carcinogenesis.
Hideki Furuya, Paulette M Tamashiro, Yoshiko Shimizu, Kayoko Iino, Rafael Peres, Runpu Chen

Carcinogenesis· December 2017

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Trypanosome RNA Editing Mediator Complex proteins have distinct functions in gRNA utilization.
Rachel M Simpson, Andrew E Bruno, Runpu Chen, Kaylen Lott, Brianna L Tylec

Nucleic Acids Res· July 2017

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Computational approach for deriving cancer progression roadmaps from static sample data.
Yijun Sun, Jin Yao, Le Yang, Runpu Chen, Norma J Nowak

Nucleic Acids Res· May 2017

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