Publications by authors named "Ruolan Qiu"

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Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation.
Giancarlo Bonora, Vijay Ramani, Ritambhara Singh, He Fang, Dana L Jackson, Ruolan Qiu

Genome Biol· September 2021

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Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data.
Hyeon-Jin Kim, Galip Gürkan Yardımcı, Giancarlo Bonora, Vijay Ramani, Jie Liu, Ruolan Qiu

PLoS Comput Biol· September 2020

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Sci-Hi-C: A single-cell Hi-C method for mapping 3D genome organization in large number of single cells.
Vijay Ramani, Xinxian Deng, Ruolan Qiu, Choli Lee, Christine M Disteche

Methods· January 2020

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The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae).
Valerie L Soza, Dale Lindsley, Adam Waalkes, Elizabeth Ramage, Rupali P Patwardhan, Ruolan Qiu

Genome Biol Evol· December 2019

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High Sensitivity Profiling of Chromatin Structure by MNase-SSP.
Vijay Ramani, Ruolan Qiu, Jay Shendure

Cell Rep· February 2019

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High-resolution comparative analysis of great ape genomes.
Zev N Kronenberg, Ian T Fiddes, David Gordon, Shwetha Murali, Stuart Cantsilieris, Ruolan Qiu

Science· June 2018

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Massively multiplex single-cell Hi-C.
Vijay Ramani, Xinxian Deng, Ruolan Qiu, Kevin L Gunderson, Frank J Steemers

Nat Methods· March 2017

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Mapping 3D genome architecture through in situ DNase Hi-C.
Vijay Ramani, Darren A Cusanovich, Ronald J Hause, Wenxiu Ma, Ruolan Qiu

Nat Protoc· November 2016

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High-throughput determination of RNA structure by proximity ligation.
Vijay Ramani, Ruolan Qiu, Jay Shendure

Nat Biotechnol· September 2015

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Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions.
Joshua N Burton, Andrew Adey, Rupali P Patwardhan, Ruolan Qiu, Jacob O Kitzman

Nat Biotechnol· December 2013

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The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line.
Andrew Adey, Joshua N Burton, Jacob O Kitzman, Joseph B Hiatt, Alexandra P Lewis, Ruolan Qiu

Nature· August 2013

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Non-invasive fetal genome sequencing: opportunities and challenges.
Holly K Tabor, Jeffrey C Murray, Hilary S Gammill, Jacob O Kitzman, Matthew W Snyder, Ruolan Qiu

Am J Med Genet A· October 2012

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Noninvasive whole-genome sequencing of a human fetus.
Jacob O Kitzman, Matthew W Snyder, Mario Ventura, Alexandra P Lewis, Ruolan Qiu

Sci Transl Med· June 2012

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Haplotype-resolved genome sequencing of a Gujarati Indian individual.
Jacob O Kitzman, Alexandra P Mackenzie, Andrew Adey, Joseph B Hiatt, Rupali P Patwardhan, Ruolan Qiu

Nat Biotechnol· January 2011

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Highly punctuated patterns of population structure on the X chromosome and implications for African evolutionary history.
Charla A Lambert, Caitlin F Connelly, Jennifer Madeoy, Ruolan Qiu, Maynard V Olson

Am J Hum Genet· January 2010

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Targeted, haplotype-resolved resequencing of long segments of the human genome.
Christopher K Raymond, Sandhya Subramanian, Marcia Paddock, Ruolan Qiu, Chloe Deodato

Genomics· December 2005

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Ancient haplotypes of the HLA Class II region.
Christopher K Raymond, Arnold Kas, Marcia Paddock, Ruolan Qiu, Yang Zhou

Genome Res· September 2005

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