Publications by authors named "Ruopeng Xie"

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Resurgence of Zoonotic Highly Pathogenic Avian Influenza A(H5N1) Virus in Cambodia.
Jurre Y Siegers, Ruopeng Xie, Kimberly M Edwards, Alexander M P Byrne, Shu Hu

N Engl J Med· October 2025

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Influenza A(H5N1) Virus Clade 2.3.2.1a in Traveler Returning to Australia from India, 2024.
Yi-Mo Deng, Michelle Wille, Clyde Dapat, Ruopeng Xie, Olivia Lay

Emerg Infect Dis· January 2025

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Integrating Contact Tracing Data to Enhance Outbreak Phylodynamic Inference: A Deep Learning Approach.
Ruopeng Xie, Dillon C Adam, Shu Hu, Benjamin J Cowling, Olivier Gascuel

Mol Biol Evol· November 2024

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The episodic resurgence of highly pathogenic avian influenza H5 virus.
Ruopeng Xie, Kimberly M Edwards, Michelle Wille, Xiaoman Wei, Sook-San Wong

Nature· October 2023

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Resurgence of Omicron BA.2 in SARS-CoV-2 infection-naive Hong Kong.
Ruopeng Xie, Kimberly M Edwards, Dillon C Adam, Kathy S M Leung, Tim K Tsang

Nat Commun· April 2023

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Genomic epidemiology of seasonal influenza circulation in China during prolonged border closure from 2020 to 2021.
Ruopeng Xie, Dillon C Adam, Kimberly M Edwards, Shreya Gurung, Xiaoman Wei

Virus Evol· July 2022

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Off-season RSV epidemics in Australia after easing of COVID-19 restrictions.
John-Sebastian Eden, Chisha Sikazwe, Ruopeng Xie, Yi-Mo Deng, Sheena G Sullivan

Nat Commun· May 2022

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Human seasonal influenza under COVID-19 and the potential consequences of influenza lineage elimination.
Vijaykrishna Dhanasekaran, Sheena Sullivan, Kimberly M Edwards, Ruopeng Xie, Arseniy Khvorov

Nat Commun· March 2022

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Genomic epidemiology of SARS-CoV-2 under an elimination strategy in Hong Kong.
Haogao Gu, Ruopeng Xie, Dillon C Adam, Joseph L-H Tsui, Daniel K Chu

Nat Commun· February 2022

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Air travel-related outbreak of multiple SARS-CoV-2 variants.
Vijaykrishna Dhanasekaran, Kimberly M Edwards, Ruopeng Xie, Haogao Gu, Dillon C Adam

J Travel Med· December 2021

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Genetic and Antigenic Characterization of an Influenza A(H3N2) Outbreak in Cambodia and the Greater Mekong Subregion during the COVID-19 Pandemic, 2020.
Jurre Y Siegers, Vijaykrishna Dhanasekaran, Ruopeng Xie, Yi-Mo Deng, Sarika Patel

J Virol· November 2021

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Genetic Diversity of SARS-CoV-2 among Travelers Arriving in Hong Kong.
Haogao Gu, Daniel K W Chu, Lydia D J Chang, Sammi S Y Cheuk, Shreya Gurung, Ruopeng Xie

Emerg Infect Dis· October 2021

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SARS-CoV-2 under an elimination strategy in Hong Kong.
Haogao Gu, Ruopeng Xie, Dillon C Adam, Joseph L-H Tsui, Daniel K Chu

medRxiv· June 2021

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DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy.
Ruopeng Xie, Jiahui Li, Jiawei Wang, Wei Dai, André Leier

Brief Bioinform· May 2021

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BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria.
Jiawei Wang, Jiahui Li, Yi Hou, Wei Dai, Ruopeng Xie

Nucleic Acids Res· January 2021

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AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins.
Jiawei Wang, Wei Dai, Jiahui Li, Qi Li, Ruopeng Xie

Nucleic Acids Res· January 2021

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PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins.
Jiawei Wang, Wei Dai, Jiahui Li, Ruopeng Xie, Rhys A Dunstan

Nucleic Acids Res· July 2020

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PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins.
Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier

Bioinformatics· February 2020

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Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework.
Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T Marquez-Lago

Brief Bioinform· November 2019

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Bastion3: a two-layer ensemble predictor of type III secreted effectors.
Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T Marquez-Lago

Bioinformatics· June 2019

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