Publications by authors named "Ruslan Soldatov"

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Disrupted priming within draining lymph nodes drives immune quiescence in gastric cancer.
Sohrab Salehi, Emily E Stroobant, Hannah Lees, Ya-Hui Lin, Shoji Shimada, Ruslan Soldatov

bioRxiv· May 2025

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Inherited resilience to clonal hematopoiesis by modifying stem cell RNA regulation.
Gaurav Agarwal, Mateusz Antoszewski, Xueqin Xie, Yash Pershad, Uma P Arora, Ruslan Soldatov

bioRxiv· March 2025

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Haplotype-aware analysis of somatic copy number variations from single-cell transcriptomes.
Teng Gao, Ruslan Soldatov, Hirak Sarkar, Adam Kurkiewicz, Evan Biederstedt

Nat Biotechnol· March 2023

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scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data.
Louis Faure, Ruslan Soldatov, Peter V Kharchenko, Igor Adameyko

Bioinformatics· January 2023

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Cell segmentation in imaging-based spatial transcriptomics.
Viktor Petukhov, Rosalind J Xu, Ruslan A Soldatov, Paolo Cadinu, Konstantin Khodosevich

Nat Biotechnol· March 2022

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Population sequencing data reveal a compendium of mutational processes in the human germ line.
Vladimir B Seplyarskiy, Ruslan A Soldatov, Evan Koch, Ryan J McGinty, Jakob M Goldmann

Science· August 2021

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RNA velocity-current challenges and future perspectives.
Volker Bergen, Ruslan A Soldatov, Peter V Kharchenko, Fabian J Theis

Mol Syst Biol· August 2021

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Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth.
Jan Krivanek, Ruslan A Soldatov, Maria Eleni Kastriti, Tatiana Chontorotzea, Anna Nele Herdina

Nat Commun· September 2020

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Spatiotemporal structure of cell fate decisions in murine neural crest.
Ruslan Soldatov, Marketa Kaucka, Maria Eleni Kastriti, Julian Petersen, Tatiana Chontorotzea

Science· June 2019

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RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner

Nature· August 2018

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Evolution of Local Mutation Rate and Its Determinants.
Nadezhda V Terekhanova, Vladimir B Seplyarskiy, Ruslan A Soldatov, Georgii A Bazykin

Mol Biol Evol· May 2017

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Differential processing of small RNAs during endoplasmic reticulum stress.
Mikhail V Mesitov, Ruslan A Soldatov, Danila M Zaichenko, Sophie G Malakho, Tatyana S Klementyeva

Sci Rep· April 2017

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Probing-directed identification of novel structured RNAs.
Svetlana V Vinogradova, Roman A Sutormin, Andrey A Mironov, Ruslan A Soldatov

RNA Biol· November 2016

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APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication.
Vladimir B Seplyarskiy, Ruslan A Soldatov, Konstantin Y Popadin, Stylianos E Antonarakis, Georgii A Bazykin

Genome Res· February 2016

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Polymerase ζ Activity Is Linked to Replication Timing in Humans: Evidence from Mutational Signatures.
Vladimir B Seplyarskiy, Georgii A Bazykin, Ruslan A Soldatov

Mol Biol Evol· December 2015

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RNASurface: fast and accurate detection of locally optimal potentially structured RNA segments.
Ruslan A Soldatov, Svetlana V Vinogradova, Andrey A Mironov

Bioinformatics· February 2014

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