Publications by authors named "Russ B Altman"

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Publisher Correction: CRISPR-GPT for agentic automation of gene-editing experiments.
Yuanhao Qu, Kaixuan Huang, Ming Yin, Kanghong Zhan, Dyllan Liu, Russ B Altman

Nat Biomed Eng· December 2025

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Empirical Drug Dosage Validates Pharmacogenomic Associations in All of Us.
Jan Matthias, Maria J Falaguera, Russ B Altman

Clin Transl Sci· November 2025

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Reframing Justice in Healthcare AI: An Ubuntu-Based Approach for Africa.
Aloysius Ochasi, Abdoul Jalil Djiberou Mahamadou, Russ B Altman, Levi U C Nkwocha

Dev World Bioeth· October 2025

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SubCell: Proteome-aware vision foundation models for microscopy capture single-cell biology.
Ankit Gupta, Zoe Wefers, Konstantin Kahnert, Jan N Hansen, Mohini K Misra, Russ B Altman

bioRxiv· October 2025

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Paying attention to attention: High attention sites as indicators of protein family and function in language models.
Gowri Nayar, Alp Tartici, Russ B Altman

PLoS Comput Biol· September 2025

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Conditional Generative Models for Synthetic Tabular Data: Applications for Precision Medicine and Diverse Representations.
Kara Liu, Russ B Altman

Annu Rev Biomed Data Sci· August 2025

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Protein functional site annotation using local structure embeddings.
Alexander Derry, Alp Tartici, Russ B Altman

Proc Natl Acad Sci U S A· August 2025

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CRISPR-GPT for Agentic Automation of Gene Editing Experiments.
Yuanhao Qu, Kaixuan Huang, Ming Yin, Kanghong Zhan, Dyllan Liu, Russ B Altman

bioRxiv· July 2025

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Unsupervised learning reveals landscape of local structural motifs across protein classes.
Alexander Derry, Haim Krupkin, Alp Tartici, Russ B Altman

Bioinformatics· July 2025

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Semi-supervised data-integrated feature importance enhances performance and interpretability of biological classification tasks.
Jun W Kim, Russ B Altman

Bioinformatics· July 2025

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CRISPR-GPT for agentic automation of gene-editing experiments.
Yuanhao Qu, Kaixuan Huang, Ming Yin, Kanghong Zhan, Dyllan Liu, Russ B Altman

Nat Biomed Eng· July 2025

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Pool PaRTI: a PageRank-based pooling method for identifying critical residues and enhancing protein sequence representations.
Alp Tartici, Gowri Nayar, Russ B Altman

Bioinformatics· June 2025

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Monitoring the opioid epidemic via social media discussions.
Delaney A Smith, Adam Lavertu, Aadesh Salecha, Tymor Hamamsy, Keith Humphreys, Russ B Altman

NPJ Digit Med· May 2025

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Which social media platforms facilitate monitoring the opioid crisis?
Kristy A Carpenter, Anna T Nguyen, Delaney A Smith, Issah A Samori, Keith Humphreys, Russ B Altman

PLOS Digit Health· April 2025

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Genetic association studies using disease liabilities from deep neural networks.
Lu Yang, Marie C Sadler, Russ B Altman

Am J Hum Genet· March 2025

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Leveraging large-scale biobank EHRs to enhance pharmacogenetics of cardiometabolic disease medications.
Marie C Sadler, Alexander Apostolov, Caterina Cevallos, Chiara Auwerx, Diogo M Ribeiro, Russ B Altman

Nat Commun· March 2025

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Pool PaRTI: A PageRank-Based Pooling Method for Identifying Critical Residues and Enhancing Protein Sequence Representations.
Alp Tartici, Gowri Nayar, Russ B Altman

bioRxiv· March 2025

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The E2F4 transcriptional repressor is a key mechanistic regulator of colon cancer resistance to (CPT-11).
Junichi Matsubara, Yong Fuga Li, Sanjay Koul, Junko Mukohyama, Luis E Valencia Salazar, Russ B Altman

bioRxiv· January 2025

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Heterogeneous network approaches to protein pathway prediction.
Gowri Nayar, Russ B Altman

Comput Struct Biotechnol J· December 2024

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Identifying DNA methylation sites affecting drug response using electronic health record-derived GWAS summary statistics.
Delaney A Smith, Stephanie A Arteaga, Marie C Sadler, Russ B Altman

Pac Symp Biocomput· December 2024

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Toward a framework for risk mitigation of potential misuse of artificial intelligence in biomedical research.
Artem A Trotsyuk, Quinn Waeiss, Raina Talwar Bhatia, Brandon J Aponte, Isabella M L Heffernan, Russ B Altman

Nat Mach Intell· December 2024

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Which social media platforms facilitate monitoring the opioid crisis?
Kristy A Carpenter, Anna T Nguyen, Delaney A Smith, Issah A Samori, Keith Humphreys, Russ B Altman

medRxiv· October 2024

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Prospector Heads: Generalized Feature Attribution for Large Models & Data.
Gautam Machiraju, Alexander Derry, Arjun Desai, Neel Guha, Amir-Hossein Karimi, Russ B Altman

ArXiv· June 2024

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Elucidating the semantics-topology trade-off for knowledge inference-based pharmacological discovery.
Daniel N Sosa, Georgiana Neculae, Julien Fauqueur, Russ B Altman

J Biomed Semantics· May 2024

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Leveraging large-scale biobank EHRs to enhance pharmacogenetics of cardiometabolic disease medications.
Marie C Sadler, Alexander Apostolov, Caterina Cevallos, Diogo M Ribeiro, Russ B Altman

medRxiv· April 2024

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