Publications by authors named "Russell D Wolfinger"

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snATAC-Express infers Gene Expression from Prioritized Chromatin Accessibility Peaks using Machine Learning.
Margaret Brown, Alessandro Ferrari, Anne Dodd, Fang Shi, Vasantha L Kolachala, Russell D Wolfinger

bioRxiv· July 2025

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Flusion: Integrating multiple data sources for accurate influenza predictions.
Evan L Ray, Yijin Wang, Russell D Wolfinger, Nicholas G Reich

Epidemics· March 2025

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Toward an Explainable Large Language Model for the Automatic Identification of the Drug-Induced Liver Injury Literature.
Chunwei Ma, Russell D Wolfinger

Chem Res Toxicol· September 2024

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e-Cigarettes, Smoking Cessation, and Weight Change: Retrospective Secondary Analysis of the Evaluating the Efficacy of e-Cigarette Use for Smoking Cessation Trial.
Lynnette Lyzwinski, Meichen Dong, Russell D Wolfinger, Kristian B Filion, Mark J Eisenberg

JMIR Public Health Surveill· September 2024

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Automatic text classification of drug-induced liver injury using document-term matrix and XGBoost.
Minjun Chen, Yue Wu, Byron Wingerd, Zhichao Liu, Joshua Xu, Russell D Wolfinger

Front Artif Intell· June 2024

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Breeding-assisted genomics: Applying meta-GWAS for milling and baking quality in CIMMYT wheat breeding program.
Sarah D Battenfield, Jaime L Sheridan, Luciano D C E Silva, Kelci J Miclaus, Susanne Dreisigacker, Russell D Wolfinger

PLoS One· April 2019

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Two approaches for estimating the lower limit of quantitation (LLOQ) of microRNA levels assayed as exploratory biomarkers by RT-qPCR.
Russell D Wolfinger, Sudheer Beedanagari, Eric Boitier, Tao Chen, Philippe Couttet

BMC Biotechnol· February 2018

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The international MAQC Society launches to enhance reproducibility of high-throughput technologies.
Leming Shi, Rebecca Kusko, Russell D Wolfinger, Benjamin Haibe-Kains, Matthias Fischer

Nat Biotechnol· December 2017

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A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer.
Fatemeh Seyednasrollah, Devin C Koestler, Tao Wang, Stephen R Piccolo, Roberto Vega, Russell D Wolfinger

JCO Clin Cancer Inform· November 2017

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Identification of dietary patterns associated with obesity in a nationally representative survey of Canadian adults: application of a priori, hybrid, and simplified dietary pattern techniques.
Mahsa Jessri, Russell D Wolfinger, Wendy Y Lou, Mary R L'Abbé

Am J Clin Nutr· March 2017

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A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages.
Ying Yu, James C Fuscoe, Chen Zhao, Chao Guo, Meiwen Jia, Russell D Wolfinger

Nat Commun· October 2015

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Comparison of RNA-seq and microarray-based models for clinical endpoint prediction.
Wenqian Zhang, Ying Yu, Falk Hertwig, Jean Thierry-Mieg, Wenwei Zhang, Russell D Wolfinger

Genome Biol· June 2015

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Comparison of microarrays and RNA-seq for gene expression analyses of dose-response experiments.
Michael B Black, Bethany B Parks, Linda Pluta, Tzu-Ming Chu, Bruce C Allen, Russell D Wolfinger

Toxicol Sci· February 2014

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Summarizing the incidence of adverse events using volcano plots and time intervals.
Richard C Zink, Russell D Wolfinger, Geoffrey Mann

Clin Trials· January 2014

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A genomics-based analysis of relative potencies of dioxin-like compounds in primary rat hepatocytes.
J Craig Rowlands, Robert Budinsky, Bhaskar Gollapudi, Michael B Black, Russell D Wolfinger

Toxicol Sci· December 2013

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Principal variance component analysis of crop composition data: a case study on herbicide-tolerant cotton.
Jay M Harrison, Delia Howard, Marianne Malven, Steven C Halls, Angela H Culler, Russell D Wolfinger

J Agric Food Chem· July 2013

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Reanalysis of Richter et al. (2010) on reproducibility.
Russell D Wolfinger

Nat Methods· May 2013

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Relative impact of incorporating pharmacokinetics on predicting in vivo hazard and mode of action from high-throughput in vitro toxicity assays.
Barbara A Wetmore, John F Wambaugh, Stephen S Ferguson, Lili Li, Harvey J Clewell, Russell D Wolfinger

Toxicol Sci· April 2013

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Technical reproducibility of genotyping SNP arrays used in genome-wide association studies.
Huixiao Hong, Lei Xu, Jie Liu, Wendell D Jones, Zhenqiang Su, Russell D Wolfinger

PLoS One· March 2013

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Anti-Oligomannose Antibodies as Potential Serum Biomarkers of Aggressive Prostate Cancer.
Denong Wang, Laila Dafik, Rosalie Nolley, Wei Huang, Russell D Wolfinger

Drug Dev Res· March 2013

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A comprehensive statistical analysis of predicting in vivo hazard using high-throughput in vitro screening.
Russell S Thomas, Michael B Black, Lili Li, Eric Healy, Tzu-Ming Chu, Russell D Wolfinger

Toxicol Sci· August 2012

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Gene set analysis of genome-wide association studies: methodological issues and perspectives.
Lily Wang, Peilin Jia, Russell D Wolfinger, Xi Chen, Zhongming Zhao

Genomics· July 2011

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Kernel density weighted loess normalization improves the performance of detection within asymmetrical data.
Wen-Ping Hsieh, Tzu-Ming Chu, Yu-Min Lin, Russell D Wolfinger

BMC Bioinformatics· June 2011

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An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies.
Lily Wang, Peilin Jia, Russell D Wolfinger, Xi Chen, Britney L Grayson

Bioinformatics· March 2011

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Maternal influences on the transmission of leukocyte gene expression profiles in population samples from Brisbane, Australia.
Elizabeth Mason, Graham Tronc, Katia Nones, Nick Matigian, Jinhee Kim, Russell D Wolfinger

PLoS One· December 2010

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