Publications by authors named "Russell Malmberg"

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The microbiome and metatranscriptome of a panel from the mapping population reveal complex assembly and function involving host influence.
Jiazhang Cai, Iqra Mohsin, Willie Rogers, Mengrui Zhang, Lin Jiang, Russell Malmberg

Front Plant Sci· October 2024

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Human MicroRNA Target Prediction via Multi-Hypotheses Learning.
Mohammad Mohebbi, Liang Ding, Russell L Malmberg, Liming Cai

J Comput Biol· February 2021

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A carnivorous plant genetic map: pitcher/insect-capture QTL on a genetic linkage map of .
Russell L Malmberg, Willie L Rogers, Magdy S Alabady

Life Sci Alliance· December 2018

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Accurate prediction of human miRNA targets via graph modeling of the miRNA-target duplex.
Mohammad Mohebbi, Liang Ding, Russell L Malmberg, Cory Momany, Khaled Rasheed

J Bioinform Comput Biol· August 2018

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UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study.
Peng Qi, Davis Gimode, Dipnarayan Saha, Stephan Schröder, Debkanta Chakraborty, Russell L Malmberg

BMC Plant Biol· June 2018

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Development of Transcriptomic Markers for Population Analysis Using Restriction Site Associated RNA Sequencing (RARseq).
Magdy S Alabady, Willie L Rogers, Russell L Malmberg

PLoS One· May 2016

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Accurate prediction of RNA nucleotide interactions with backbone k-tree model.
Liang Ding, Xingran Xue, Sal LaMarca, Mohammad Mohebbi, Abdul Samad, Russell L Malmberg

Bioinformatics· August 2015

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Species tree estimation of diploid Helianthus (Asteraceae) using target enrichment.
Jessica D Stephens, Willie L Rogers, Chase M Mason, Lisa A Donovan, Russell L Malmberg

Am J Bot· June 2015

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Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment.
Jessica D Stephens, Willie L Rogers, Karolina Heyduk, Jennifer M Cruse-Sanders, Ron O Determann, Russell L Malmberg

Mol Phylogenet Evol· April 2015

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Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNA.
Amirhossein Manzourolajdad, Yingfeng Wang, Timothy I Shaw, Russell L Malmberg

J Theor Biol· February 2013

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TRFolder-W: a web server for telomerase RNA structure prediction in yeast genomes.
Dong Zhang, Xingran Xue, Russell L Malmberg, Liming Cai

Bioinformatics· October 2012

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Simultaneous prediction of RNA secondary structure and helix coaxial stacking.
Pooya Shareghi, Yingfeng Wang, Russell Malmberg, Liming Cai

BMC Genomics· June 2012

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Longitudinal trends in climate drive flowering time clines in North American Arabidopsis thaliana.
Karen E Samis, Courtney J Murren, Oliver Bossdorf, Kathleen Donohue, Charles B Fenster, Russell L Malmberg

Ecol Evol· June 2012

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Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds.
Yingfeng Wang, Amir Manzour, Pooya Shareghi, Timothy I Shaw, Ying-Wai Li, Russell L Malmberg

BMC Bioinformatics· April 2012

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Mutational patterns in RNA secondary structure evolution examined in three RNA families.
Anuj Srivastava, Liming Cai, Jan Mrázek, Russell L Malmberg

PLoS One· November 2011

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Transcriptome analysis of sarracenia, an insectivorous plant.
Anuj Srivastava, Willie L Rogers, Catherine M Breton, Liming Cai, Russell L Malmberg

DNA Res· August 2011

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RNApasta: a tool for analysis of RNA structural alignments.
Russell L Malmberg, Timothy I Shaw, Liming Cai

Int J Bioinform Res Appl· June 2011

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TRFolder: computational prediction of novel telomerase RNA structures in yeast genomes.
Leilei Guo, Dong Zhang, Yingfeng Wang, Russell L Malmberg, Michael McEachern

Int J Bioinform Res Appl· June 2011

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Analyzing modular RNA structure reveals low global structural entropy in microRNA sequence.
Timothy I Shaw, Amir Manzour, Yingfeng Wang, Russell L Malmberg, Liming Cai

J Bioinform Comput Biol· April 2011

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Development and characterization of microsatellite markers in Sarracenia L. (pitcher plant) species.
Willie L Rogers, Jennifer M Cruse-Sanders, Ron Determann, Russell L Malmberg

Conserv Genet Resour· December 2010

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RNATOPS-W: a web server for RNA structure searches of genomes.
Yingfeng Wang, Zhibin Huang, Yong Wu, Russell L Malmberg, Liming Cai

Bioinformatics· April 2009

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Fast and accurate search for non-coding RNA pseudoknot structures in genomes.
Zhibin Huang, Yong Wu, Joseph Robertson, Liang Feng, Russell L Malmberg

Bioinformatics· October 2008

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Rapid ab initio prediction of RNA pseudoknots via graph tree decomposition.
Jizhen Zhao, Russell L Malmberg, Liming Cai

J Math Biol· January 2008

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Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots.
Yinglei Song, Chunmei Liu, Russell L Malmberg, Congzhou He, Liming Cai

Int J Bioinform Res Appl· January 2008

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Analysis of septins across kingdoms reveals orthology and new motifs.
Fangfang Pan, Russell L Malmberg, Michelle Momany

BMC Evol Biol· July 2007

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