Publications by authors named "Ruth Ley"

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Infection with gut parasites correlates with gut microbiome diversity across human populations in Africa.
Mirabeau M Ngwese, Bayode R Adegbite, Jeannot F Zinsou, J Liam Fitzstevens, Victor T Schmidt, Ruth E Ley

Gut Microbes· December 2025

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MMonitor for real-time monitoring of microbial communities using long reads.
Timo N Lucas, Ulrike Biehain, Anupam Gautam, Kurt Gemeinhardt, Tobias Lass, Ruth E Ley

Cell Rep Methods· December 2025

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Dietary fat disrupts a commensal-host lipid network that promotes metabolic health.
Kendra Klag, Darci Ott, Trevor S Tippetts, Rebekah J Nicolson, Sean M Tatum, James Weagley, Ruth Ley

Cell Metab· November 2025

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Class switch toward IgG2 and IgG4 is more pronounced in BNT162b2 compared to mRNA-1273 COVID-19 vaccinees.
Alex S Siebner, Johanna Griesbaum, Kelsey E Huus, Judith Flügge, Kristina Hopfensperger, Ruth E Ley

Int J Infect Dis· October 2025

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Carbohydrates and the oxidative branch of the pentose phosphate pathway modify phage resistance by phase-variable S-layers.
Jaime J Fuentes, Shaleni Singh, Nicholas A Pudlo, Stacey L Heaver, Ruth E Ley

J Bacteriol· October 2025

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Selection and transmission of the gut microbiome alone can shift mammalian behavior.
Taichi A Suzuki, Akbuğa-Schön Tanja, Jillian L Waters, Dennis Jakob, Dai Long Vu, Ruth E Ley

Nat Commun· October 2025

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Medication use is associated with distinct microbial features in anxiety and depression.
Amanda Hazel Dilmore, Rayus Kuplicki, Daniel McDonald, Megha Kumar, Mehrbod Estaki, Ruth E Ley

Mol Psychiatry· June 2025

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Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution.
Hagay Enav, Inbal Paz, Ruth E Ley

Nat Biotechnol· May 2025

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Carbohydrates and the oxidative branch of the pentose phosphate pathway modify phage resistance by phase variable S-layers.
Jaime J Fuentes, Shaleni Singh, Nicholas A Pudlo, Stacey L Heaver, Ruth E Ley

bioRxiv· May 2025

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microbiota model recapitulates and predicts individualised sensitivity to dietary emulsifier.
Héloïse Rytter, Sabrine Naimi, Gary Wu, Jim Lewis, Maeva Duquesnoy, Ruth E Ley

Gut· April 2025

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Clinical translation of microbiome research.
Jack A Gilbert, Meghan B Azad, Fredrik Bäckhed, Martin J Blaser, Mariana Byndloss, Ruth E Ley

Nat Med· April 2025

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Cross-kingdom-mediated detection of intestinal protozoa through NLRP6.
Nathaniel J Winsor, Giuliano Bayer, Ojas Singh, Jeremy K Chan, Lu Yi Li, Ruth E Ley

Cell Host Microbe· March 2025

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Gut bacterial metabolism produces neuroactive steroids in pregnant women.
Kelsey E Huus, Ruth E Ley

Life Metab· December 2024

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Stress-sensitive neural circuits change the gut microbiome via duodenal glands.
Hao Chang, Matthew H Perkins, Leonardo S Novaes, Feng Qian, Tong Zhang, Ruth E Ley

Cell· September 2024

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Integrating research on bacterial pathogens and commensals to fight infections-an ecological perspective.
Lisa Maier, Christoph Stein-Thoeringer, Ruth E Ley, Heike Brötz-Oesterhelt, Hannes Link

Lancet Microbe· August 2024

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Gut microbiome diversity within is negatively associated with human obesity.
Laura Salazar-Jaramillo, Jacobo de la Cuesta-Zuluaga, Luis A Chica, María Cadavid, Ruth E Ley

mSystems· August 2024

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Prevention and cure of murine infection by a Lachnospiraceae strain.
Juan Noriega Tejada, William A Walters, Yanling Wang, Melissa Kordahi, Benoit Chassaing, Ruth Ley

Gut Microbes· August 2024

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Spatially resolved lipidomics shows conditional transfer of lipids produced by Bacteroides thetaiotaomicron into the mouse gut.
Claudia Mirretta Barone, Stacey L Heaver, Lars Gruber, Fabian Zundel, Dai Long Vu, Ruth E Ley

Cell Host Microbe· June 2024

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Medication Use is Associated with Distinct Microbial Features in Anxiety and Depression.
Amanda Hazel Dilmore, Rayus Kuplicki, Daniel McDonald, Megha Kumar, Mehrbod Estaki, Ruth E Ley

bioRxiv· March 2024

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The keystone gut species boosts gut microbial biomass and voluntary physical activity in mice.
Tanja Akbuğa-Schön, Taichi A Suzuki, Dennis Jakob, Dai Long Vu, Jillian L Waters, Ruth E Ley

mBio· February 2024

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A modified Michaelis-Menten equation estimates growth from birth to 3 years in healthy babies in the USA.
William A Walters, Catherine Ley, Trevor Hastie, Ruth E Ley, Julie Parsonnet

BMC Med Res Methodol· February 2024

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Human Intestinal Microbiome Determines Individualized Inflammatory Response to Dietary Emulsifier Carboxymethylcellulose Consumption.
Noëmie Daniel, Gary D Wu, William Walters, Charlene Compher, Josephine Ni, Ruth E Ley

Cell Mol Gastroenterol Hepatol· January 2024

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Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy.
Jacobo de la Cuesta-Zuluaga, Kelsey E Huus, Nicholas D Youngblut, Juan S Escobar, Ruth E Ley

Gut Microbes· December 2023

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An integrated systems biology approach reveals differences in formate metabolism in the genus .
Isabella Casini, Tim McCubbin, Sofia Esquivel-Elizondo, Guillermo G Luque, Daria Evseeva, Ruth E Ley

iScience· October 2023

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Toward Microbiome Engineering: Expanding the Repertoire of Genetically Tractable Members of the Human Gut Microbiome.
James W Marsh, Christian Kirk, Ruth E Ley

Annu Rev Microbiol· September 2023

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