Publications by authors named "Ryan Ames"

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A conserved fungal Knr4/Smi1 protein is crucial for maintaining cell wall stress tolerance and host plant pathogenesis.
Erika Kroll, Carlos Bayon, Jason Rudd, Victoria J Armer, Anjana Magaji-Umashankar, Ryan Ames

PLoS Pathog· January 2025

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Analysis of Pneumocystis Transcription Factor Evolution and Implications for Biology and Lifestyle.
Ryan Ames, Alistair J P Brown, Ivana Gudelj, Olga A Nev

mBio· February 2023

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Single-cell transcriptomics identifies master regulators of neurodegeneration in SOD1 ALS iPSC-derived motor neurons.
Seema C Namboori, Patricia Thomas, Ryan Ames, Sophie Hawkins, Lawrence O Garrett

Stem Cell Reports· December 2021

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Transcriptomic adaptation during skeletal muscle habituation to eccentric or concentric exercise training.
Craig R G Willis, Colleen S Deane, Ryan M Ames, Joseph J Bass, Daniel J Wilkinson

Sci Rep· December 2021

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A biallelic SNIP1 Amish founder variant causes a recognizable neurodevelopmental disorder.
Zineb Ammous, Lettie E Rawlins, Hannah Jones, Joseph S Leslie, Olivia Wenger, Ryan M Ames

PLoS Genet· September 2021

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Changes to the identity of EndoC-βH1 beta cells may be mediated by stress-induced depletion of HNRNPD.
Nicola Jeffery, David Chambers, Brandon M Invergo, Ryan M Ames, Lorna W Harries

Cell Biosci· July 2021

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Transcriptomic meta-analysis of disuse muscle atrophy vs. resistance exercise-induced hypertrophy in young and older humans.
Colleen S Deane, Craig R G Willis, Bethan E Phillips, Philip J Atherton, Lorna W Harries, Ryan M Ames

J Cachexia Sarcopenia Muscle· June 2021

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Three Related Enzymes in Candida albicans Achieve Arginine- and Agmatine-Dependent Metabolism That Is Essential for Growth and Fungal Virulence.
Katja Schaefer, Jeanette Wagener, Ryan M Ames, Stella Christou, Donna M MacCallum

mBio· August 2020

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Islet-expressed circular RNAs are associated with type 2 diabetes status in human primary islets and in peripheral blood.
Shahnaz Haque, Ryan M Ames, Karen Moore, Benjamin P Lee, Nicola Jeffery

BMC Med Genomics· April 2020

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Identifying Gene Networks Involved in Pathogenicity.
Graham Thomas, Judith M Bain, Susan Budge, Alistair J P Brown, Ryan M Ames

Front Genet· April 2020

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The feasibility of using citizens to segment anatomy from medical images: Accuracy and motivation.
Judith R Meakin, Ryan M Ames, J Charles G Jeynes, Jo Welsman, Michael Gundry

PLoS One· March 2020

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circRNAs expressed in human peripheral blood are associated with human aging phenotypes, cellular senescence and mouse lifespan.
Shahnaz Haque, Ryan M Ames, Karen Moore, Luke C Pilling, Luanne L Peters

Geroscience· February 2020

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Network analysis of human muscle adaptation to aging and contraction.
Craig R G Willis, Ryan M Ames, Colleen S Deane, Bethan E Phillips, Catherine L Boereboom

Aging (Albany NY)· January 2020

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The acute transcriptional response to resistance exercise: impact of age and contraction mode.
Colleen S Deane, Ryan M Ames, Bethan E Phillips, Michael N Weedon, Craig R G Willis

Aging (Albany NY)· April 2019

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Rapid functional and evolutionary changes follow gene duplication in yeast.
Samina Naseeb, Ryan M Ames, Daniela Delneri, Simon C Lovell

Proc Biol Sci· August 2017

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Gene-obesogenic environment interactions in the UK Biobank study.
Jessica Tyrrell, Andrew R Wood, Ryan M Ames, Hanieh Yaghootkar, Robin N Beaumont

Int J Epidemiol· April 2017

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Using Network Extracted Ontologies to Identify Novel Genes with Roles in Appressorium Development in the Rice Blast Fungus Magnaporthe oryzae.
Ryan M Ames

Microorganisms· January 2017

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Disentangling the multigenic and pleiotropic nature of molecular function.
Ruth A Stoney, Ryan M Ames, Goran Nenadic, David L Robertson, Jean-Marc Schwartz

BMC Syst Biol· September 2016

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Binding interface change and cryptic variation in the evolution of protein-protein interactions.
Ryan M Ames, David Talavera, Simon G Williams, David L Robertson, Simon C Lovell

BMC Evol Biol· February 2016

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DupliPHY-Web: a web server for DupliPHY and DupliPHY-ML.
Ryan M Ames, Simon C Lovell

Bioinformatics· February 2015

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Inferring gene family histories in yeast identifies lineage specific expansions.
Ryan M Ames, Daniel Money, Simon C Lovell

PLoS One· January 2015

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Modular biological function is most effectively captured by combining molecular interaction data types.
Ryan M Ames, Jamie I Macpherson, John W Pinney, Simon C Lovell, David L Robertson

PLoS One· November 2013

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Determining the evolutionary history of gene families.
Ryan M Ames, Daniel Money, Vikramsinh P Ghatge, Simon Whelan, Simon C Lovell

Bioinformatics· January 2012

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Diversification at transcription factor binding sites within a species and the implications for environmental adaptation.
Ryan M Ames, Simon C Lovell

Mol Biol Evol· December 2011

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Gene duplication and environmental adaptation within yeast populations.
Ryan M Ames, Bharat M Rash, Kathryn E Hentges, David L Robertson, Daniela Delneri

Genome Biol Evol· December 2010

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