Publications by authors named "Ryan Benz"

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Multiplexed Nanoparticle Protein Corona Enables Accurate and Precise Deep Plasma Proteomics.
Ting Huang, Jian Wang, Alexey Stukalov, Simion Kreimer, Xiaoyan Zhao, Ryan W Benz

J Proteome Res· November 2025

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Deep Profiling of Plasma Proteoforms with Engineered Nanoparticles for Top-Down Proteomics.
Che-Fan Huang, Michael A Hollas, Aniel Sanchez, Mrittika Bhattacharya, Giang Ho, Ryan Benz

J Proteome Res· October 2024

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The Space Omics and Medical Atlas (SOMA) and international astronaut biobank.
Eliah G Overbey, JangKeun Kim, Braden T Tierney, Jiwoon Park, Nadia Houerbi, Ryan W Benz

Nature· August 2024

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Deep Profiling of Plasma Proteoforms with Engineered Nanoparticles for Top-down Proteomics.
Che-Fan Huang, Michael A Hollas, Aniel Sanchez, Mrittika Bhattacharya, Giang Ho, Ryan Benz

bioRxiv· July 2024

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A Scaled Proteomic Discovery Study for Prostate Cancer Diagnostic Markers Using Proteograph and Trapped Ion Mobility Mass Spectrometry.
Matthew E K Chang, Jane Lange, Jessie May Cartier, Travis W Moore, Sophia M Soriano, Ryan Benz

Int J Mol Sci· July 2024

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Secretome profiling reveals acute changes in oxidative stress, brain homeostasis, and coagulation following short-duration spaceflight.
Nadia Houerbi, JangKeun Kim, Eliah G Overbey, Richa Batra, Annalise Schweickart, Ryan Benz

Nat Commun· June 2024

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Protein Coronas on Functionalized Nanoparticles Enable Quantitative and Precise Large-Scale Deep Plasma Proteomics.
Ting Huang, Jian Wang, Alexey Stukalov, Margaret K R Donovan, Shadi Ferdosi, Ryan W Benz

bioRxiv· August 2023

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Additive Manufacturing of Multimaterial Composites for Radiation Shielding and Thermal Management.
Devon Beck, Jacob Bickus, Ethan Klein, Paul Miller, Salvatore Di Cecca, Ryan Benz

ACS Appl Mater Interfaces· July 2023

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Functionally distinct BMP1 isoforms show an opposite pattern of abundance in plasma from non-small cell lung cancer subjects and controls.
Margaret K R Donovan, Yingxiang Huang, John E Blume, Jian Wang, Daniel Hornburg, Ryan W Benz

PLoS One· March 2023

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Engineered nanoparticles enable deep proteomics studies at scale by leveraging tunable nano-bio interactions.
Shadi Ferdosi, Behzad Tangeysh, Tristan R Brown, Patrick A Everley, Michael Figa, Ryan Benz

Proc Natl Acad Sci U S A· March 2022

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Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona.
John E Blume, William C Manning, Gregory Troiano, Daniel Hornburg, Michael Figa, Ryan Benz

Nat Commun· July 2020

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Magnetic resonance spectroscopy (MRS) can identify painful lumbar discs and may facilitate improved clinical outcomes of lumbar surgeries for discogenic pain.
Matthew G Gornet, James Peacock, John Claude, Francine W Schranck, Anne G Copay, Ryan Benz

Eur Spine J· April 2019

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A large-scale and robust dynamic MRM study of colorectal cancer biomarkers.
Jia You, Athit Kao, Roslyn Dillon, Lisa J Croner, Ryan Benz

J Proteomics· September 2018

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Discovery and validation of a colorectal cancer classifier in a new blood test with improved performance for high-risk subjects.
Lisa J Croner, Roslyn Dillon, Athit Kao, Stefanie N Kairs, Ryan Benz

Clin Proteomics· July 2017

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Discovery and Validation of Plasma-Protein Biomarker Panels for the Detection of Colorectal Cancer and Advanced Adenoma in a Danish Collection of Samples from Patients Referred for Diagnostic Colonoscopy.
John E Blume, Michael Wilhelmsen, Ryan W Benz, Nils Brünner, Ib J Christensen

J Appl Lab Med· September 2016

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A Plasma-Based Protein Marker Panel for Colorectal Cancer Detection Identified by Multiplex Targeted Mass Spectrometry.
Jeffrey J Jones, Bruce E Wilcox, Ryan W Benz, Naveen Babbar, Genna Boragine

Clin Colorectal Cancer· June 2016

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Data-driven high-throughput prediction of the 3-D structure of small molecules: review and progress.
Alessio Andronico, Arlo Randall, Ryan W Benz, Pierre Baldi

J Chem Inf Model· April 2011

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Computational prediction and experimental verification of new MAP kinase docking sites and substrates including Gli transcription factors.
Thomas C Whisenant, David T Ho, Ryan W Benz, Jeffrey S Rogers, Robyn M Kaake

PLoS Comput Biol· August 2010

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BLASTing small molecules--statistics and extreme statistics of chemical similarity scores.
Pierre Baldi, Ryan W Benz

Bioinformatics· July 2008

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Discovery of power-laws in chemical space.
Ryan W Benz, S Joshua Swamidass, Pierre Baldi

J Chem Inf Model· June 2008

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Lossless compression of chemical fingerprints using integer entropy codes improves storage and retrieval.
Pierre Baldi, Ryan W Benz, Daniel S Hirschberg, S Joshua Swamidass

J Chem Inf Model· February 2008

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Diffraction-based density restraints for membrane and membrane-peptide molecular dynamics simulations.
Ryan W Benz, Hirsh Nanda, Francisco Castro-Román, Stephen H White, Douglas J Tobias

Biophys J· November 2006

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Investigation of finite system-size effects in molecular dynamics simulations of lipid bilayers.
Francisco Castro-Román, Ryan W Benz, Stephen H White, Douglas J Tobias

J Phys Chem B· November 2006

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Experimental validation of molecular dynamics simulations of lipid bilayers: a new approach.
Ryan W Benz, Francisco Castro-Román, Douglas J Tobias, Stephen H White

Biophys J· February 2005

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