Publications by authors named "Ryan D Bomgarden"

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Achieving a 35-Plex Tandem Mass Tag Reagent Set through Deuterium Incorporation.
Nathan R Zuniga, Dustin C Frost, Karsten Kuhn, Myungsun Shin, Rebecca L Whitehouse, Ryan D Bomgarden

J Proteome Res· November 2024

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Adapting an Isobaric Tag-Labeled Yeast Peptide Standard to Develop Targeted Proteomics Assays.
Kevin D Dong, Ernst W Schmid, Ryan D Bomgarden, Jae H Choi, Steven P Gygi

J Proteome Res· January 2024

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Fe-NTA magnetic beads as an alternative to spin column-based phosphopeptide enrichment.
Xinyue Liu, Valentina Rossio, Sanjukta Guha Thakurta, Amarjeet Flora, Leigh Foster, Ryan D Bomgarden

J Proteomics· May 2022

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A Membrane-Permeable and Immobilized Metal Affinity Chromatography (IMAC) Enrichable Cross-Linking Reagent to Advance In Vivo Cross-Linking Mass Spectrometry.
Pin-Lian Jiang, Cong Wang, Anne Diehl, Rosa Viner, Chris Etienne, Ryan D Bomgarden

Angew Chem Int Ed Engl· March 2022

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Super Heavy TMTpro Labeling Reagent: An Alternative and Higher-Charge-State-Amenable Stable-Isotope-Labeled TMTpro Variant.
Alban Ordureau, Qing Yu, Ryan D Bomgarden, John C Rogers, J Wade Harper

J Proteome Res· May 2021

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TMTpro-18plex: The Expanded and Complete Set of TMTpro Reagents for Sample Multiplexing.
Jiaming Li, Zhenying Cai, Ryan D Bomgarden, Ian Pike, Karsten Kuhn

J Proteome Res· May 2021

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TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples.
Jiaming Li, Jonathan G Van Vranken, Laura Pontano Vaites, Devin K Schweppe, Edward L Huttlin, Ryan D Bomgarden

Nat Methods· April 2020

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Sample Preparation for Mass Spectrometry-Based Proteomics; from Proteomes to Peptides.
John C Rogers, Ryan D Bomgarden

Adv Exp Med Biol· September 2017

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AminoxyTMT: A novel multi-functional reagent for characterization of protein carbonylation.
Somaieh Afiuni-Zadeh, John C Rogers, Sergei I Snovida, Ryan D Bomgarden, Timothy J Griffin

Biotechniques· April 2016

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Dual Labeling Biotin Switch Assay to Reduce Bias Derived From Different Cysteine Subpopulations: A Method to Maximize S-Nitrosylation Detection.
Heaseung Sophia Chung, Christopher I Murray, Vidya Venkatraman, Erin L Crowgey, Peter P Rainer, Ryan D Bomgarden

Circ Res· October 2015

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Proteomic quantification and site-mapping of S-nitrosylated proteins using isobaric iodoTMT reagents.
Zhe Qu, Fanjun Meng, Ryan D Bomgarden, Rosa I Viner, Jilong Li

J Proteome Res· July 2014

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Mass spectrometry-based quantitative proteomics for dissecting multiplexed redox cysteine modifications in nitric oxide-protected cardiomyocyte under hypoxia.
Kuan-Ting Pan, Yi-Yun Chen, Tsung-Hsien Pu, Yu-Shu Chao, Chun-Yi Yang, Ryan D Bomgarden

Antioxid Redox Signal· March 2014

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Opposing effects of the UV lesion repair protein XPA and UV bypass polymerase eta on ATR checkpoint signaling.
Ryan D Bomgarden, Patrick J Lupardus, Deena V Soni, Muh-Ching Yee, James M Ford

EMBO J· June 2006

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A novel protein activity mediates DNA binding of an ATR-ATRIP complex.
Ryan D Bomgarden, Dawn Yean, Muh-Ching Yee, Karlene A Cimprich

J Biol Chem· April 2004

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