Publications by authors named "Ryan Dale"

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The Role of Osteoblasts in Phenotypic Variability of Dominant Osteogenesis Imperfecta: Evidence from Patients and Murine Models.
Milena Jovanovic, Apratim Mitra, Chris Stephan, Ka Wai Wong, Sara Talvacchio, Ryan K Dale

Int J Mol Sci· December 2025

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RNA-RNA interactome approaches provide in vivo evidence for a critical role of the Hfq rim face in sRNA-mRNA pairing.
Xing Luo, Aixia Zhang, Caroline Esnault, François De Mets, Philip P Adams, Ryan K Dale

Nucleic Acids Res· November 2025

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The hereditary spastic paraplegia type 21 (SPG21) protein is a RAB7A effector that promotes noncanonical mTORC1-catalyzed TFEB phosphorylation and cytoplasmic retention.
Jennifer M Kunselman, Chad D Williamson, Adriana E Golding, Rui Jia, Mira Sohn, Ryan K Dale

Mol Biol Cell· October 2025

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Young KRAB-zinc finger gene clusters are highly dynamic incubators of ERV-driven genetic heterogeneity in mice.
Melania Bruno, Sharaf M Farhana, Apratim Mitra, Kevin Costello, Dawn E Watkins-Chow, Ryan K Dale

Nat Commun· October 2025

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Phosphatidylserine and RhoB connect phosphatidylinositol 4-phosphate and phosphatidic acid metabolism at the plasma membrane.
Shiying Huang, Yeun Ju Kim, Xiaofu Cao, Timothy W Bumpus, Mira Sohn, Ryan S Dale

bioRxiv· October 2025

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Deletion of a single CTCF motif at the boundary of a chromatin domain with three FGF genes disrupts gene expression and embryonic development.
Shreeta Chakraborty, Nina Wenzlitschke, Matthew J Anderson, Ariel Eraso, Manon Baudic, Ryan K Dale

Dev Cell· July 2025

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In vivo profiling of the endothelium using 'AngioTag' zebrafish.
Mayumi F Miller, Leah J Greenspan, Derek E Gildea, Kathryn Monzo, Gennady Margolin, Ryan K Dale

Angiogenesis· July 2025

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RNA-RNA Interactome Approaches Provide Evidence for a Critical Role of the Hfq Rim Face in sRNA-mRNA Pairing.
Xing Luo, Aixia Zhang, Caroline Esnault, François De Mets, Philip P Adams, Ryan K Dale

bioRxiv· June 2025

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Modulation of protein activity by small RNA base pairing internal to coding sequences.
Narumon Thongdee, Miranda M Alaniz, Ekaterina Samatova, Aoshu Zhong, Caroline Esnault, Ryan K Dale

Mol Cell· May 2025

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Reducing methylation of histone 3.3 lysine 4 in the medial ganglionic eminence and hypothalamus recapitulates neurodevelopmental disorder phenotypes.
Jianing Li, Anthony Tanzillo, Giusy Pizzirusso, Adam Caccavano, Ramesh Chittajallu, Ryan K Dale

bioRxiv· May 2025

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ATF2 phosphorylation is a core transcriptional driver of neuron apoptosis.
Jorge Gómez-Deza, Matthew Nebiyou, Lara H El Touny, Mor R Alkaslasi, Zhenyu Zuo, Ryan Dale

bioRxiv· May 2025

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Anatomical and Molecular Characterization of the Zebrafish Meninges.
Marina Venero Galanternik, Daniel Castranova, Ryan D Gober, Tuyet Nguyen, Madeleine Kenton, Ryan K Dale

bioRxiv· April 2025

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A Novel Transgenic Reporter to Study Vertebrate Epigenetics.
Miranda Marvel, Aniket V Gore, Kiyohito Taimatsu, Daniel Castranova, Gennady Margolin, Ryan Dale

bioRxiv· April 2025

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Young KRAB-zinc finger gene clusters are highly dynamic incubators of ERV-driven genetic heterogeneity in mice.
Melania Bruno, Sharaf Maisha, Apratim Mitra, Kevin Costello, Dawn Watkins-Chow, Ryan Dale

bioRxiv· March 2025

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-Null Osteoblasts Have Increased Proliferation, Protein Secretion, and Skeletal Morphogenesis Gene Expression with Downregulation of Cellular Adhesion.
Aileen M Barnes, Apratim Mitra, Marianne M Knue, Alberta Derkyi, An Dang Do, Ryan K Dale

Cells· March 2025

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Structural perturbation of chromatin domains with multiple developmental regulators can severely impact gene regulation and development.
Shreeta Chakraborty, Nina Wenzlitschke, Matthew J Anderson, Ariel Eraso, Manon Baudic, Ryan K Dale

bioRxiv· August 2024

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The role of LEDGF in transcription is exploited by HIV-1 to position integration.
Rakesh Pathak, Caroline Esnault, Rajalingam Radhakrishnan, Parmit K Singh, Hongen Zhang, Ryan Dale

bioRxiv· July 2024

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Messenger RNA transport on lysosomal vesicles maintains axonal mitochondrial homeostasis and prevents axonal degeneration.
Raffaella De Pace, Saikat Ghosh, Veronica H Ryan, Mira Sohn, Michal Jarnik, Ryan K Dale

Nat Neurosci· June 2024

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Loss of Ezh2 in the medial ganglionic eminence alters interneuron fate, cell morphology and gene expression profiles.
Christopher T Rhodes, Dhanya Asokumar, Mira Sohn, Shovan Naskar, Lielle Elisha, Ryan K Dale

Front Cell Neurosci· February 2024

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Profiles of Wnt pathway gene expression during tooth morphogenesis.
Resmi Raju, Jeremie Oliver Piña, Daniela M Roth, Parna Chattaraj, Fahad K Kidwai, Ryan K Dale

Front Physiol· January 2024

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Multimodal spatiotemporal transcriptomic resolution of embryonic palate osteogenesis.
Jeremie Oliver Piña, Resmi Raju, Daniela M Roth, Emma Wentworth Winchester, Parna Chattaraj, Ryan K Dale

Nat Commun· September 2023

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Absence of TRIC-B from type XIV Osteogenesis Imperfecta osteoblasts alters cell adhesion and mitochondrial function - A multi-omics study.
Milena Jovanovic, Apratim Mitra, Roberta Besio, Barbara Maria Contento, Ka Wai Wong, Ryan K Dale

Matrix Biol· August 2023

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Cerebrospinal Fluid Protein Biomarker Discovery in CLN3.
An N Dang Do, David E Sleat, Kiersten Campbell, Nicholas L Johnson, Haiyan Zheng, Ryan K Dale

J Proteome Res· July 2023

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Germline loss-of-function variants are enriched in subjects with pituitary hypersecretion.
Giampaolo Trivellin, Adrian F Daly, Laura C Hernández-Ramírez, Elisa Araldi, Christina Tatsi, Ryan K Dale

Front Endocrinol (Lausanne)· July 2023

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Extensive diversity in RNA termination and regulation revealed by transcriptome mapping for the Lyme pathogen Borrelia burgdorferi.
Emily Petroni, Caroline Esnault, Daniel Tetreault, Ryan K Dale, Gisela Storz

Nat Commun· July 2023

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