Publications by authors named "Ryan Mueller"

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Regenerative rehabilitation: Navigating the gap between preclinical promises and clinical realities for treating trauma-induced volumetric muscle loss.
Koyal Garg, Julia Brockhouse, Christopher M McAndrew, Alex J Reiter, Johnny G Owens, Ryan J Mueller

J Physiol· December 2025

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Two dueling Dolichospermum strains in an Oregon lake determine occurrence of cyanotoxic blooms.
Theo W Dreher, Connie S Bozarth, Jonathan W Shepardson, Norman L Buccola, Ryan S Mueller

Harmful Algae· December 2025

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Aerith: Visualization and Annotation of Isotopic Enrichment Patterns of Peptides and Metabolites with Stable Isotope Labeling from Proteomics and Metabolomics.
Yi Xiong, Ryan S Mueller, Shichao Feng, Xuan Guo, Chongle Pan

Anal Chem· November 2025

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Biosponge-Encased Placental Stem Cells for Volumetric Muscle Loss Repair.
David Johnson, Amelia Ridolfo, Ryan Mueller, Megan Chermack, Julia Brockhouse

Adv Wound Care (New Rochelle)· February 2025

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Genomic and Epigenomic Analysis of Plasma Cell-Free DNA Identifies Stemness Features Associated with Worse Survival in Lethal Prostate Cancer.
Pradeep S Chauhan, Irfan Alahi, Savar Sinha, Elisa M Ledet, Ryan Mueller

Clin Cancer Res· January 2025

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Seagrass wasting disease prevalence and lesion area increase with invertebrate grazing across the northeastern Pacific.
Lillian R Aoki, Carmen J Ritter, Deanna S Beatty, Lia K Domke, Ginny L Eckert, Ryan S Mueller

Ecology· January 2025

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Marine heatwaves and disease alter community metabolism and DOC fluxes on a widespread habitat-forming seagrass species (Zostera marina).
Luis G Egea, Rocío Jiménez-Ramos, Mary K English, Fiona Tomas, Ryan S Mueller

Sci Total Environ· December 2024

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Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins.
Yi Xiong, Ryan S Mueller, Shichao Feng, Xuan Guo, Chongle Pan

Microbiome· August 2024

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Corrigendum: Immunomodulatory effects of a probiotic combination treatment to improve the survival of Pacific oyster ( larvae against infection by .
Jennifer Hesser, Ryan Mueller, Chris Langdon, Carla Schubiger

Front Immunol· July 2024

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Immunomodulatory effects of a probiotic combination treatment to improve the survival of Pacific oyster ( larvae against infection by .
Jennifer Hesser, Ryan S Mueller, Chris Langdon, Carla B Schubiger

Front Immunol· April 2024

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Genomic and epigenomic analysis of plasma cell-free DNA identifies stemness features associated with worse survival in -altered lethal prostate cancer.
Pradeep S Chauhan, Irfan Alahi, Savar Sinha, Alexander L Shiang, Ryan Mueller

medRxiv· December 2023

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Woronichinia naegeliana: A common nontoxigenic component of temperate freshwater cyanobacterial blooms with 30% of its genome in transposons.
Theo W Dreher, Robin Matthews, Edward W Davis, Ryan S Mueller

Harmful Algae· June 2023

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Genome sequence of freshwater nontoxigenic Limnoraphis associated with microcystin-producing blooms.
Theo W Dreher, Edward W Davis, Frank M Wilhelm, Sarah H Burnet, Ryan S Mueller

Harmful Algae· October 2022

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Predictable Changes in Eelgrass Microbiomes with Increasing Wasting Disease Prevalence across 23° Latitude in the Northeastern Pacific.
Deanna S Beatty, Lillian R Aoki, Brendan Rappazzo, Chelsea Bergman, Lia K Domke, Ryan S Mueller

mSystems· August 2022

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7-epi-cylindrospermopsin and microcystin producers among diverse Anabaena/Dolichospermum/Aphanizomenon CyanoHABs in Oregon, USA.
Theo W Dreher, Amanda J Foss, Edward W Davis, Ryan S Mueller

Harmful Algae· July 2022

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Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes.
Li Zhang, Karen R Jonscher, Zuyuan Zhang, Yi Xiong, Ryan S Mueller

Nat Commun· June 2022

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Treatment Patterns and Overall Survival Outcomes Among Patients Aged 80 yr or Older with High-risk Prostate Cancer.
Benjamin W Fischer-Valuck, Brian C Baumann, Simon A Brown, Christopher P Filson, Aaron Weiss, Ryan Mueller

Eur Urol Open Sci· March 2022

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Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning.
Maude M David, Christine Tataru, Quintin Pope, Lydia J Baker, Mary K English, Ryan S Mueller

mSystems· February 2022

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Ancient Metabolisms of a Thermophilic Subseafloor Bacterium.
Amy R Smith, Ryan Mueller, Martin R Fisk, Frederick S Colwell

Front Microbiol· December 2021

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Phytoplankton exudates and lysates support distinct microbial consortia with specialized metabolic and ecophysiological traits.
Brandon Kieft, Zhou Li, Samuel Bryson, Robert L Hettich, Chongle Pan, Ryan S Mueller

Proc Natl Acad Sci U S A· October 2021

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Comparative genomics of the ADA clade within the Nostocales.
Theo W Dreher, Edward W Davis, Ryan S Mueller, Timothy G Otten

Harmful Algae· April 2021

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Complete genomes derived by directly sequencing freshwater bloom populations emphasize the significance of the genus level ADA clade within the Nostocales.
Theo W Dreher, Edward W Davis, Ryan S Mueller

Harmful Algae· March 2021

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Recovery and Community Succession of the Rhizobiome after Transplantation.
Lu Wang, Mary K English, Fiona Tomas, Ryan S Mueller

Appl Environ Microbiol· January 2021

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Nutrient enrichment increases size of Zostera marina shoots and enriches for sulfur and nitrogen cycling bacteria in root-associated microbiomes.
Lu Wang, Fiona Tomas, Ryan S Mueller

FEMS Microbiol Ecol· August 2020

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Comparative genomic analysis of Vibrios yields insights into genes associated with virulence towards C. gigas larvae.
Hanna Kehlet-Delgado, Claudia C Häse, Ryan S Mueller

BMC Genomics· August 2020

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