Publications by authors named "Ryan Suderman"

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PyBioNetFit and the Biological Property Specification Language.
Eshan D Mitra, Ryan Suderman, Joshua Colvin, Alexander Ionkov, Andrew Hu

iScience· September 2019

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Generalizing Gillespie's Direct Method to Enable Network-Free Simulations.
Ryan Suderman, Eshan D Mitra, Yen Ting Lin, Keesha E Erickson, Song Feng

Bull Math Biol· August 2019

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Using RuleBuilder to Graphically Define and Visualize BioNetGen-Language Patterns and Reaction Rules.
Ryan Suderman, G Matthew Fricke, William S Hlavacek

Methods Mol Biol· July 2019

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A Step-by-Step Guide to Using BioNetFit.
William S Hlavacek, Jennifer A Csicsery-Ronay, Lewis R Baker, María Del Carmen Ramos Álamo, Alexander Ionkov, Ryan Suderman

Methods Mol Biol· July 2019

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Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor.
Keesha E Erickson, Oleksii S Rukhlenko, Md Shahinuzzaman, Kalina P Slavkova, Yen Ting Lin, Ryan Suderman

PLoS Comput Biol· January 2019

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Intrinsic limits of information transmission in biochemical signalling motifs.
Ryan Suderman, Eric J Deeds

Interface Focus· December 2018

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Preassembled GPCR signaling complexes mediate distinct cellular responses to ultralow ligand concentrations.
Srgjan Civciristov, Andrew M Ellisdon, Ryan Suderman, Cindy K Pon, Bronwyn A Evans

Sci Signal· October 2018

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Fundamental trade-offs between information flow in single cells and cellular populations.
Ryan Suderman, John A Bachman, Adam Smith, Peter K Sorger, Eric J Deeds

Proc Natl Acad Sci U S A· May 2017

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Machines vs. ensembles: effective MAPK signaling through heterogeneous sets of protein complexes.
Ryan Suderman, Eric J Deeds

PLoS Comput Biol· May 2014

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